RnoINT0097411 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163047148-163048807:-
Coord C1 exon
chr1:163048694-163048807
Coord A exon
chr1:163047302-163048693
Coord C2 exon
chr1:163047148-163047301
Length
1392 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CCTCCCCGCTCTGGCCCCAGGGT
3' ss Score
10.26
Exon sequences
Seq C1 exon
GCCCCTGATGAGAGGAACTATCACGTGTTCTACTGTATGCTGGAGGGCATGAATGAGGAGGAGAAGAAGAAGCTAGGCCTAGGCCAGGCCGCTGACTACAACTATTTGGCAATG
Seq A exon
GTGAGGTCCAGGTGACATACTGGGGGTAACACCTGTCTTGGTGATGTAGGGCAAGACCAAACTTGGCAGTGTGGCACTGTACCAGCCCATCCAGGCTTGCCTGTGCCTTAAACAATGTGCCCTCACTTGGGCATATGTCCCTAATGTATTCTTACCACAGATCCATTTCTCAAGGTCAACACAGAGCATGGGGCCATAGCATATAGGAGCCACAGAACCAAGCACATTGACCTGCTCATACGCTAAGCTAGACTTTAAAGGTCTCTGCTGGGCCTCCTAGGATTGAGGGAGCTGGTTGCTGAGGCCTGGACCTCCAGGATTTGTTGATGACAGGCTCTGATGCTGGTTTCTGGTACTCTGTGGCTCTAAGGCAGTGGGTCTCCCTCTACCCCTTTGAGGATTGAATGACCCTTTCACGGGGGTCACCTAAGACCATCGGAAAACACAGATATTTGCATTACAATTTATAACTAGCAAAATTACAACTATGAAGTAGCAACAAAATAATTTTATGATTGGATGTCACCACAACACAAGGAACTTTACTAAAGGGTCGCAGCACTAGGAAGATTGAGACCCACTGCTCTAGGGGCTGTGCACACAGACTGTTAAGTTGAGAATTCCAACTCTATTCTCCAGAGAGAACCTTTTCAGGATTTAAGGTGTTGTGGGTGGGACAGGACCTTCTCTTCTGTACTTCTGTAACTAGCTGGCTGGCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAAACATACCACACACCACATACCACATACTACATACACACCATACACACACCCAGAGAACACACAAACACATCATAAAACCATACATACACACATGCACACCACATAAAGCATATACCACACCACACACATATTGCACACCACACACACAACCACATACATACCACACACCACATACAACATACATACACACACATGCACCACATACAGCACACACCACTACATACAAAGATATACCACATACATGCACACACACATACATGCACACATGTGTACACCACACACACACACACACACACACGCTACTGAGCAGGCTGTGTCTATACTTCCCCTCTGTGGTTCACACATGGTTACAGTTGGAGGGAAGTCCCCCACGAGTGGGCAGGCACCCTGGAGCTGTGTGGAGCTGGGTGAGGTGTTGGTGCTGTGAGCTGGGACAGAAAGGAGTGGCTGGGTGGGCCTGTATAGTGCCCAGTTCTTACTCATGTCAGAGTGCCCCAGAGAAGACCACAAGACCATTCTAAATATTCTGGGGTGTTGCCCTCCTGACATCTCCTTGACACTTCCCTATCTCCCTCTTTTATGCCTCCCCGCTCTGGCCCCAG
Seq C2 exon
GGTAACTGCATCACCTGTGAGGGCCGTGTGGACAGTCAGGAGTATGCCAACATCCGCTCAGCCATGAAGGTGCTCATGTTCACAGACACGGAGAACTGGGAGATCTTGAAGCTTCTGGCCGCCATCCTACACATGGGCAATCTGCAGTACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTGATGAGAGGAACTAT
R:
CGTACTGCAGATTGCCCATGT
Band lengths:
265-1657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]