GgaINT1018809 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192400925-192402169:-
Coord C1 exon
chr1:192402056-192402169
Coord A exon
chr1:192401079-192402055
Coord C2 exon
chr1:192400925-192401078
Length
977 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CAACATCCTTGCCTTCCCAGGGT
3' ss Score
7.74
Exon sequences
Seq C1 exon
GCCCAGGACGAGAGGAATTACCACGTGTTCTACTGCATGCTGAGAGGAATGACAATGGAGCAGAAGAAGAAGCTGGGTCTTGGGAAAGCCACAGACTACAACTATCTTGCAATG
Seq A exon
GTGAGGGTGCAAAGAAGTGAAGATTTGGAGGGATGAGATGGTGTGAACTTCTTAGCAAGGGAGGGAGAAGTGGAAGCTCTTCCTCCAGGAGACTGTTTTGCTGGTTATAACCCTCTTGAGTCTTAGTCACAGAATAATGAGAATTATTTGTCCCAGCACTTCAAGCCTTACAATCTTAGGACAAACCCTTAACCCCTTTGTATTAGGCATGTTACATCCACTATTTCTGTTGGATGGTTGGGGTGTTTTTATTCCTGGACCACTTGTTTGGACATAGCTAGGGTGCTAGATACAAACCAATGCTCCTGGAGAAACAACGGAAGGGGATGAATGTGTCTGGCAGCCACCAGACACACACAAACAGCAATTTATTCTCACCTCAAGGAGCTTTTTCTCTGATTGATTCTCTCGAGTGCTTAAAGGGAGCCTACAGAAAGATGGAGAGAGACTTTATCAGAGATTATAGTGACAGAACAAGGTGTAATGGGTATGAATTAAGTCTGGAGACATACATTAAATATAAGGAGGAAATTTTTCATTCATAGGGTAGAGAGGCCCTAACACAGGCTGCCCAGAGGAGCTGTAGGTACCCTATTCCTGACAGTGCCCAAGGTTGGTAGGGGCTTTGGTCACCTGGTCTATAGAAGGTGACCCTGCCCATGGCAGGAGTTGGGACTGGATGGGCTTTAAGATCTCTTCCAACTTAAACCGTTCTATGATTCTATGACACAGGGTGGCTAGGGACAGTAGGGCAGTGCAGTTCACAGGGCTGAGAACCAAATCATGGCCTACACCAAAGGGCAGAACCAGACCAATAGGTTCATCTTGCTTATTTATTCCTTAGGCAAAACTTCTGCCTAACTAGGTCTGATAGGTTTTTTTTTTGCTTTTTCTGCAAAGCCCTGTTAGCTTTAAGTTGCACCAAGCTCTGCCAAATTCACTCAGTTTTACCTCATGCAACATCCTTGCCTTCCCAG
Seq C2 exon
GGTAACTGCACAACCTGCGATGGCAGAGATGACAGCAAGGAATATGCCAACATCCGCTCTGCCATGAAGGTCCTTATGTTCACCGACACAGAAAACTGGGAGATCTCCAAGCTGCTGGCTGCCATCCTGCACATGGGGAACCTGAAGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGACGAGAGGAATTAC
R:
ACTTCAGGTTCCCCATGTGCA
Band lengths:
262-1239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]