BtaINT0098304 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57348080-57349734:+
Coord C1 exon
chr15:57348080-57348193
Coord A exon
chr15:57348194-57349580
Coord C2 exon
chr15:57349581-57349734
Length
1387 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTCCAACTTCCTGCCACCAGGGT
3' ss Score
7.61
Exon sequences
Seq C1 exon
GCTCCAGATGAAAGGAATTACCACGTGTTCTACTGCATGCTGGAGGGCATGAATGAGGAGCAGAAGAAGAAGCTGGGCCTGGGCCAGGCCACGGACTATAACTACTTGGCCATG
Seq A exon
GTGAGGCCCAGGTGGGCACCCGGGGAGGCGGACACCTGTCCCAGCCCCTCCCCAGCTCCAGGCCTGGTGGGTGGGAACTTCTCTGTGGGCTTTTTTTCATCCTCTGATGGGCACCAGCCTACCATAAAGCGTGTTCCCCATGTGGGCACACACTTGCTCCCCCATCCATCTAGATGAATTCTTGCCACAGATACTAGTAATAATGCTTCGGTTGTGTCTGACTCATTGTGACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGTAAGGATACTGGAGTGGGTTGGCATGCCCTCTTCTAGGGGATCTTCCTGGCCCAGCGATTGAACCTGCGTCTTTCATACGTCTTACCTTGGCAGCGGGTCCTTTACCACTAGCGTCGGCTGGGAAGCCCACCACAGATACACACATTCCTAAATGTGTAGGTGTCCCAGACCCAGGGACACAGACACGCGCATGCCTGCGTGTCTACACACTCGGCCCTGCCTGCACACATGTTCTGTGGTACTTTAGTTTTTGAGGTCGTGGAGGCTGTGACCTCTGCCGGGCCCCCCCCCCCCCCCCCCCCTCAGGATTGTGGAGCACAGGCTGCTGTGGCTTCAGCCTTGGGTGCTAGCTGGTTGCCAGGCCCTGGTGCCAGCCTCTTGCTGGGGTCTGGCCACCAAGGATAAGGGGGCCAGAGGCCTTTGCTGCCACTCAGTGCCACTGAGGGGCCATGCACACAGCAGGCTGGCTTGGGGGGGCACTGGCTTCCTCTGCCCTGGGAGGAGCCCATGCCTGGTTGTCTAGACCCAAGCTTGGCCAGCCGCGTGGACACAAACACGGGCTACAGCACTTGAGGGATATGGGACAACAAAGGCGTGTGTGTGTTGTAGGTGACAGGCCTTCCTGGACACTTCCTTTAGCTGGCTGGCACACTTGGACACACACACACACACACACACGTCTCATAGGCACACACAGTGGGGCAGACCCCTTGACACCCTGCCTGTCCACAGTCACCACCCCACCTTCCACCCCAGGCTGCACCTGGTGAGGGGTTCAAGTCCCTGAGAGTGTGTGTCCATAGGGGGTGAGGGGCATGGTAAGGCCTTGGTGCTGTGACTGCAGGGCAGGGTGGCAGTGGCAAGCCTGGCATCAGTGACCTGGGTCCTCTCACTCTTGGGAAGAAGGGGCATCCAGGCTCCCCTGATGCAGGAACGTGTTCTTGAGAAGCCCAGCCAGGAGCTTTCTAGATTTCTTGGAGGAGTCCTAGGTGAGGTCAGTGCCCAGAAACCCAGGCTGGCCCAGCCCAGGCACTGCCTCTCTGGGGGTAACCTATGGTCTCTGTGACACCCTCCTGCTCCCTGCTTTCCAACTTCCTGCCACCAG
Seq C2 exon
GGTAACTGCGTAATCTGTGAGGGCCGCGAGGACAGCCAGGAATATGCCAACATCCGCTCAGCCATGAAGGTGCTCATGTTCACGGACACGGAGAACTGGGAGATCTCGAAGCTGCTAGCTGCCATCCTGCATCTGGGCAACCTGCAGTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGAAAGGAATTACCACGT
R:
CTCATACTGCAGGTTGCCCAG
Band lengths:
265-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development