MmuINT0107639 @ mm9
Intron Retention
Gene
ENSMUSG00000026749 | Nek6
Description
NIMA (never in mitosis gene a)-related expressed kinase 6 [Source:MGI Symbol;Acc:MGI:1891638]
Coordinates
chr2:38437903-38443010:+
Coord C1 exon
chr2:38437903-38438016
Coord A exon
chr2:38438017-38440799
Coord C2 exon
chr2:38440800-38443010
Length
2783 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACAGAATTCTTTCCTTGCAGCTT
3' ss Score
7.5
Exon sequences
Seq C1 exon
ATGGCAGCTCTCCAGAGCCCCTTCTATGGAGATAAGATGAATCTCTTCTCCCTCTGCCAAAAGATTGAGCAGTGTGACTACCCGCCTCTCCCGGGAGAGCACTACTCTGAGAAG
Seq A exon
GTGAGCAAGCTGGGGCTGGTCCTGGTGTACTTCCAGGAGGGGTGGTTCTCAAGTGCCTGAAGCTTGCGGGATGCAGCAGCACACAGATGTCCTAAGACGTATTGCCAGGCTAGTGGAACCGAGTACCAGGGAGGTCAGAGGTGGGCACCTTGGGCTCATTGGTTGGTTGGTCTGCTCTGTGTTAATAGGCCTGTAACTCTGGAATTTAGACTTTCATATTTTATGCTGGGTGCAGGGGCCCTGGACAGTTCCTGGCTGTGTGAAGCTCATCCACAGAACCATTATTTTTTTTTTTTTTTAATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCCCCCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCAAGAACCATTATTTTTTAAATGGGCTAAATTATATCTCCCTCATGAATAAACTATGAAGGGTAGGTGACAGGTCTCATGGCACAGTAGTGGTACAGGGTACAGGCATATGATAGATCAATATACTTCCTTCACTGCCTTGAGACTCAGTTTCCTCATCTCTAACATGGGGACAAAAGTAGAATCTCCTGTCCAAGTTTAAGATAAAGGATTAATGCATGTGACATGTTTAATAATAGAGCCCGGCCACCATCTACCACCACCATCAAAAGTAGCAATTGTAAGTAACACAGCTCCATGTAAATGTTTGCTAAACATCATCTGTGATGTCTTGTTGACAGTGGATGCTAAAGGTGAGAGTCTAAGGTCTTCCTGGGCCACTGTGCAGGACCCTAGGCCACTGAGTCATAATTCACTAAGGCACCAGCTCTCAGCCTGTGGGTCTCAACCCCTGGGGTGTGGGGGGGGCACGGCGGGTGTCAAATGACCATTTCACAGGGATCACATATCAGATATCCTGCATATCAGATATTTAGAGTTCAGAACAATATTAAAATTTCAATTATGAAGTAGCAATAAAATAGTTTTATGCTTGGGGTCACCACATAAAGAACTCTGTATTAAAGGGTTGTAGCATTAGGAAGGCTGAGAACCACTGCACCAAGGAAGTCCATCATCCAGATGAGGAGAGGCTTACAAGCAGTACCTGTGGGTGGGGACAAAGCCTAGGCAGAACCATGCAGGCTCCAAGCCAGCCTCCAGGCCCACTGGCCTCACCTGTGCAGACTGCCACCCCTGAGGTGGGGAGGTCATAGGGTAAAGAGAATTGTACATCACTCCTCTCTTCCCCCATCAGCTCCAGTGGCTTGAAGAGTTCTCAGTAGCCATTCTGGGAAAGAAAGTATCTGTGGTCTGGAGAACAAGCTGGCAGGAAAGAACAGGTTACATTCGTCACAAAGCTTGTTGCTGACTGGCTCGTTCCTTTCCTTGTTTAAACTAGAATCTCTGCACTACTAGAAGACATGTGACTTGGCTCTAATCAGTTCAGTGCTCCTGTGCCAGTCTGCCAATGGGCACCACCCACCCCACATCAGTTGCAAGGCAGCAATGAAGACCCCAGAGCCCTTAGCTTTATGTCCTAGGCAGCCATTCTAGCTCATTAGACATGCCCCTAGCAGGCAGCAGCTCCAGATCCTGCTACTGAGCACAGGGTCTGTTCCTAAACATACCCCACTTTTAAAGTTATTATCATGTTGTATTATTTTCTTATTTTTTGTTGTTTCTCTTTTTGACTGCTTCTAAGTGATCATGGGGTAGACTTCATCTTGACCTGGTTTTCAAATTTTAACGGGATGGGTCAGCCATGGTTCCCTTCCAGATCAGCTTCAGAAACCACTGTCTGTAGATGATCTCGGACTCCAGACATGCTGCACACACCATCTCCATCAGCTTATGGATTCCAGTGTTTTGCACAGCAGTAGGATCACAAAATGGGCCAGTTAAGGCAGCCCAGCTTTGGAAGTTCAGGATAGACACCCTGTTCTGAGGTGGATGCTGCAGCTCCAGGGCCTCTGGAACATGCCTGGGCCCTTCTCACCGGTCCAGGACTTCCCCCCTCTCTCCTTTTACTGGTGACCACAGCACCCTGGGCAGCAGGCACTCAGATGAAAAATGTTGCAGCCAGCCCAGTGTTGCACGTTTAAGACCCGGGCTTTTTAAGGTCATTATTTTAATTACCATTAAAATAACTAGCACTCCGGCTATCAGAACGAAAGGGATCAGAGGCTTAAGGCGCCCCTCCCCCACCCTGGCGGGCAAAGCCTTCAGTGTCTGGATAATTAAAAGCGTGTCTTTCATGAGCACAATGAAGAGGCCAGGGGGTGTGCAGACTGTAGCCTTGCTGCATGTTAATGCATTTATTATGATCAATAAGCCCTTTCCTTGAGTTTTCTCTGGTTTGGGCTTTTGTGTGACTGACAGCGGACATACATGTGCACAGTTGAAAACTGAAGATTATTTGAGGGTAAAATTCTCAGGGTCTCAAAGCATCGCCTTTGGAACTAGACAGGCATGCATACATGGGATCTGTGTGACCATGTAACTTATCCTGAAAAGCATTGTTCACTTGAAGGGACAACAGCACCATCTGAGGTGCACTTTAAGACTAACAGAATTCTTTCCTTGCAG
Seq C2 exon
CTTCGGGAACTGGTCAGTATGTGTATCTACCCTGACCCTGACCACCGACCTGACATTGTATATGTGCACCAGGTGGCTAGACAGATGCACGTCTGGACATCCAGCACCTGAACGCAACACACCTCATCAAAGCCAAGTCACTTGTCTTACTTGAGTCCTCTCCCCAAGTGGTACCTGGAAGCCCCCACAGCCAAGACTAGAGGACTCTCAGCTGGCTCCACCCAGCGGAAAACAGCTGGGCTATGGTCAGACTCCAAAGTCCTTTCTTTGAACTGTCGCAGACAATCTGAGCTGGGATGAGTGGGGAGGGGTTTGGCAGCCATGGAAACCCCTTGTACCTACTGAAATGTGAACCTCTGCCTGGTTGCTTCAGACCCGTCCAGGCCCACACGGTCAGGAGACTTGAAGGGAGCTGGGTGACTAGTGTGGGCCAGCCTTTGCAAATGGTTACCACCATTGGTTTAGTTCTTAGTACCTTTCCATACAATCAGGCTGTGTGCTTCATTTACTCTATTGTACAAGGATACGATGGAAATAATGGTTTAGAGTAGAGATTGCGCTAATATTTTTCTCTGCATTTTCTAATTTGATGAGTGACAGTAAAGAGCACCTAGCATCGGGCCTTTCGACATAAGTGGCATCTGGGAGATGGGAGGGTTCTCCTCTGTCTCCGCAGCCCTGCCCCGTCACATCACCACCGCTGGGATGCTATGGCTCACTCTAGGATCAGTGTGCAGACTTCGTCCATCCAGCAGGGAAACTCCAGAAGCTTTGCTCGCACACTGTTCTTGACAAGTTCGGGGTCTGGATCTTCCTAGTGACTTGTCAAAGTTTGTTGGCCTTTGTGTCCTTGCCTGCAAATGGGACATTATAATAAGGTGTCTGTCTTCCAGGTGGCTGACAGGATTTAAAACAAAAGTTGTTAGCCATGGCAGCCTAAGCTTGCTATCCCAGCACTTGAGAGGTAGAGGCAGGAGGATCAAGAATCCAAGGTTGCCCTGAGCAATACAGGAAGTTTGAGACAGGAACGGACTACATAAGACCCTGTCTCAAAAACAAAACAAACAAAACCCAAACCAATAGAGATGCAAATCAGCTAGCAGTGGCAGGTGATCCAAAAATACAGCCTGCCTGTCACCCCTTCAGAAAACTCAAGTCATGGACTATGCGAGTCAAGAATTAAAATACAACTGTATTATGTGCAGGAAAAGCAGAAATATGTTCATTTACTTTTTGTTCCTAATAGGATTAACTGTGAAGACTAACTTATAAATGTGAATTTAAGGAAATCTAAGTGCTGGAGGAAACAGTCTGAATTTTGTTCTTCTATTCCAGTGGGTCTCACTTTGTATATCAAGACCCCCTTTACAAACCTGTCTCCAAAGATATTTATATTACGATTCATAACCGTAGCAAAATTACAGTTATGAGGTAGCAAAGAAAATAATTTTATAGCTGGGAGTCACCACAACATAAGGAACTGTATTGAAGGGTCCCAGCATTGGGAAGGTTGAGAACCGCTGGTCTATGCAGTATTCAAGGAGCACCCACTTGGTGACAGGCCAGTGCTCCTGTCTTGTCAGGTGATGTTTACCAGGGCTCTGCACAAATAAGCTCTCTGGCTAGCCACCACCCTCTTGAGCAGGGCCTGTACTCCAGATACAGCCTCTGCCCGGATCAAGTGCTCCATATTTTAGACAAATTGGGAAGAGAGACGGCTGAGCAGCTCAGGGGTGGCCCTGACTGCGTGTCCGTGTTTTATCTTGGACTGCAGTCCACACCCAGCACACAGCAGCAGCATAACTTCTTGAGGTGCCTTTAGAAGCAACCTGTCAGGCCCAAACCGTCCAAGTAACACCAGAATATTCTTAAGTTCCCCAAATAATTCTGACACTCATCAGCCAAGCTGCTGCCCTCAATAAATCCACTGTACCCTTTCAAGCAGTTTGCACAAGGGAATCTGTCCTCCAGTGTCCTGCCCAGAATACTGACTCTGAGAAAGGATCAGAGTCGCTGTCTCCTGCCCAGCACTAACTCCTGAAAGTTTTCCTGGGTCTTTGTAAGAACTGTTTCTGTTCTTAGAGGCTCTGTTCTATCTGCCCTTGGTACAAGCAGCCTCTGCAAACCAAAGAACTTCATTTCAGCACTCTACCCATTGTCCACACCAAGAGAACTATCTGCCCAATAAAATGGCCCTTGGGATGTACAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026749-Nek6:NM_021606:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.2=100)
A:
NA
C2:
PF0006920=Pkinase=PD(10.0=70.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: