GgaINT0126163 @ galGal4
Intron Retention
Gene
ENSGALG00000001118 | NEK6
Description
serine/threonine-protein kinase Nek6 [Source:RefSeq peptide;Acc:NP_001012549]
Coordinates
chr17:9369444-9374148:+
Coord C1 exon
chr17:9369444-9369557
Coord A exon
chr17:9369558-9372140
Coord C2 exon
chr17:9372141-9374148
Length
2583 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
AATGTCTTTCTGTCTTTCAGCTC
3' ss Score
11.44
Exon sequences
Seq C1 exon
ATGGCAGCTCTTCAGAGTCCTTTCTATGGAGATAAAATGAACCTGTTTTCTCTTTGCCAAAAAATAGAGCAATGTGACTACCCGCCTCTTCCAGCTGAACATTATTCGGAGAAG
Seq A exon
GTAAATTGGGAGCATTTGTGCAGGAGAAGTGGTGGGGGTGTGGGGAAGAGCCTCTCCATCCTGGGTGTGGGGTGGGGGAGTGCAGCACTGCCCTGCAGCTGCCTGGGGAGCTGCTGAGCCTCTGAATATCAGCACACTGAAGTAAGGCAGAAAGGAAGATTTCTTAATGTGGTTTCTTAACGTGGAGAGGATTTTAAGACTGCGAGTCTGTTATGTTGGCAAAAACCAACAATGAACCGTGGGAAAGCCCTCTCCTTTGCTTCCCTTTGCTTAAAATAACATACCATGAAACCGTGCTTAAAGTTTTGTTCCAGCAGTCTTCAGCTTGTTACAGGGAGAAGTTTTTTCTACTTTTTACTTGTTTAAAATGGGGAGAAGAGGAAAACAGTTTAATTACTAAGATAATCGTTGATTCCCCAGGCTGCATAAGGGGGATTTTTGAAGTCTGGGTTTTATGTATATGGAAGTAAGGGGTGGAGAGCAGGAGCTGAACTGGGCTGTATTAAAAAAAATAGAACTGCTGCTGTGCATTGGTCGCTCTGTGACGTTGCACTTGGGCTGCAGACATGAGGGTTGTTGTTATGCAGGGCCTTTTGAGCTGGTTTTTTCTGATCTTTTTTTTTTCCTTTTCCTTGGTAAACCAGCTGTTTTCCTTTCTCATTCAGTTGTTGGTGCCTCCTATTTGAAAGGAAAAGGCTAACGTAATGTTAGGTGATGTTTTAAACTGTAGGCTCTGCAGGGCTGAGCTGTTTGGGCTGCAGAGGAGTCTGCCTGCATCGCACTGAGCTTCCCAGCTCCGATCCGTGGGCAGTCGTGGCGCAGTGCTGTCCCATCCTCTGGGCTGCCGCACAGTTTATGTTCATTCTCTCTTGCGAAGGAACGCTTACAAAAAGATAATTGGAGAAGTGTTGTGGAAAAGTGGATTATTTTTTCCCAAGCTGCTGTAGCAGCACGTCCCGGCTCTGTGCATTCACGTTTGCCGTGCTGTTGTAGCGTGCAGCTCAGGATATGCCTGCTGGCAGCAAGAATTAGTGTAAGTTGACAGATGTGTTTCCTGTCTTTACAATTACTGTCTGTTTGCTTCCCTCTGGCAGTGCTAAAGAGTGTGTGTAGTGTAGTGATACAATCCAGGGTGAGAAGGATGGTTTAAAGCTCAAAGGCGCCAGGTCCCAGAGAACCAGACTCCAGATGGTGTTCATGCACTATTAACAGAATGCCTGACAAAGTCTAAGAGGGCTGTGCCTTTGGCTGTAGCTGTATGAGCTGCTGCTGCCTACGTGAACCACAAAGAGCTCTAATTTCCTGAGTCTTAGAACGTGTCTCTGCCATGAACACTGTTTGTTTTTGTGCTGGTTTTAAAGGTTGGCTTTTCAGATGCTTCTGGAGTGCAGAGCTGAAGGAGAGGTGGGTTGGTGTCTTCCAGCAGCTGAGCAGGATGAGCCATTGGGTGGGAGCCCTTGTGCTGCAGGGCTCGGGAAAAAGCGTAGCAGCGCCTTCCTGCAGCAGTAAGTTGCACCGGCAGGAATCAGTGCTGCACACGGCGGCTGTCTGTCCCTGTGTGGACATGTTCATTTTCCTTAGGCTGATGAGGCACATTCTTTGGGCCACTCCAGTATTGCCACCGGGGCAGGCTTGGTAGTGGTGAGGGACAGCCGCCCCTCCATCCTCTCCCTGGGGCAGAGATGAGTATCAGCCAAATGAAGCCAGCAGAGTGCTTGGTGACGTGCCCCCAAACAAAGCGCGGGGAGCTGCTGACCCCCTGCATGCTTTCCTTGCAGCACTGTTGTGGATGAACGGGACAGAGCATTAATTGAGGAATGCCTGCTCGGGTGGTGTTGCCTTTCAGTGATGGCCTCCTGGCTGTGGCCTTTTCTCCAGTCTAGATCTCATGATGGACTGGAGGAGCTGAGACTGATTCGTTTTGTCTCAGAAAGATGCACTGGTAATTGTTGGCACCACTTGGGGCTGCATGTCCAGGTCAGGTCTGCCAGTTCCTGCTGGGATGGCTTCAGGCCCCGCAGCGACCCGGCGCTCAGGCTGCAGAGCTGCGGCCTCATTTGGGTACGTTCAGTAATGCAGCTGAACTGTGTGCTTGATAGCTGTAGGGTCATGCTTTTAATTACCATTAAAATAATTGGCACTGTGGCTACTGGGAGGATGTGAGAAGATCAGAGGCTCAAGGCTGTTTCTCCCTATGCCTCGGGGGTACGAGCAGCTTTCAGTGTCTGTGTAATTAAAAGCTACAATCTTTCATGTGCACAATAAAGAGGGTAGGGAGGTGGGGGGTACTTCAGCCCTTCTGCATTTTATTTATTAAACATAATCAATGACCGGTCTCTCTCCTTCACAGAGGTTCTCGAGGAAATGCTGGGGTCTGACAGCCACGCTCGGGCATCCTGTATCTTAAGATGTGTATACAGATTAACTCTGGTTCTTCCATAGAGGTGGGGTGGAACAGAAGCGTGCAGCATCAGCCACAACAGCTGCACGAAGGGCTCTCCGCTCCCATCTGCGGCAGCCCCCGATCTTCTGCCAGTAAGAAAAGCCGATGCATTTCTGTTCCAATGTCTTTCTGTCTTTCAG
Seq C2 exon
CTCCGGGAGCTGGTCAGCATGTGCATATATCCCGATCCAGATCAAAGACCTGACATTGGTTACGTGCACCAAATAGCAAAACAAATGCATGTTTGGACCTCCAGCACCTGAACCGTCTGCAGACACTCTCAAAAGCCAGCACAGCTTAGTCTTACTTGAATTTTTTTTCTCAGATGAAACCGACTGGTGCCTGGGCAGCGAGCGAGGGGAGCGCGTAGCAAGGCGCTCCATTATTTCTGCAGGTTATTTGACAAGGACTCTCACAAGGTGGTCATGCTTTAAAGTGAAGATTCTGTGAGGTATTGCAAGTGATTTATTTTTTTTTTTAAGCCAATAAGATGTTACAGGTGTAGATCATTTAAGGGTCTTTTCTTAAACTGTCGTGTGTAATGTAGGATAGACGATATTAACCGGGGTGTCAGCGTTGGGCGCACCTCTTCTATCTTAACTGTAATGTGAAATATTGAAATAATTCCTTCAGTGAAATCACTTTATACTAATGTAAGAATTGCAGTAGATTTTGTGTCGTTTGTATAACTGCTACTTCGCCTCTTCCGCAAATGGTTTATAGCAAATTTCAGTTTTTACTTTGTGTATTTTAAAGCATCCATTTATGTGTTTTTATTAATTCCCTCCTTCAGACTTAGAACTGGGAGGGCTTTGGGGGGTGGGAGGGGGTAGAAATGCATTTATTTCATGACTTTTTTTTTTTTTTAACTGAAAACTTAGAGTGAGTATTTTGCCGATGCATTTGGCTGTTAATTCAGCCACGGAGCTGAATTCAGCACACAGCTGGGGAAGAAAACCCACAAATCCTGTGCAAAGCGTGCTTCAGCAGGGCCTTCCTGAGCACCTGTTGTCCCAACTCTTCTGAGGCTGCAGGTTGTTATGAAAGCAGTGTTTCTCTCCCCCAGCTGCGTTTTTGGGAAGATGCTTGTACACGTTCAGTAGTATATTAGGTACCAGTAGGTAGAACTTTAAGCAAAGCAGTGTTTTAAACTATTTGAGGCGTACAGAAACCAAGTCAGCCAAAGGCTCCGCGTATCTTATTCCACACAAGGATCAGCCCCGTCTATTTAACTGTGAAAGCTGATTTAGAATGTGAATTTTTATAAAAATCTCAAGCTGATTAGAAGGGGTCATCTTCTTTAAATTAAAACCTTAAACCAACTAAATTCATTCATTGAATCAATGATTTGTTTCATTACTGCCATTGAAAAACATCGCCTGCTCCAGGAGCAGCCCTGGACGGGCGGCGCAGTGTTTGCAGTGTGTTGGGGCGCAGCGGTGCAGGCGGTGCAGTGCGGGAGCAGCGCTGCTCTGCTGGCGCTGAGCTGCAGTCTGTGCTGCAGTCCCAGTGCAGCCTCTGCCTCTGCTGGTTTTCTTCAAGAAATGAATACAAGCCTGAACTTTTTTTTTTTTCCAATAAGAGTAGGGTTAGAGGGTTATATACTCATATATGCTTTTAGTGGATTTTTTTAACTTGATTTTCTCTACTTAAAGGAAAATTGCAGTGCCATCTTCAACTACTTTCCACCAAATTTTGTGTATTTTTGTAGGGTAGCAAGGAAAACTACTAATTGCTGTGAATGATGTTGGTATCATTAATGCAAGGTGCCATTTTATCGTGGCTTCTCAGCAGGAAGCTGAGCCTGCTGCTCTCCTGAGAGCCCAAGGAAATTCAAATCAGCACGAGAATGGAGGAGAGGCGGCGCGTTGCTTCCCACATTCCCATGCCAACTTGTTTAATTTATAGCCATCTTCTTTAGAAATTCTTGGGTGTAAGACTTCAGACTGTCACCTTTACACTGCAGGTTTCCTTTAAGCCATGGCAGCAGTGGGCCGGGCTGGCTGTGCTGTGCTGCTGGTGGTGGAGTACCAGCAGAGGGGCGCACAGCTCCAACTGCAGTGCCTCGAGCGCTCCGCTGTCGTGCTACATAAAATTTATTAGTGCCTATAAGTAAATGTATTTCAAAAGGTAATTTTTTTTGCAATTGTGCATTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001118:ENSGALT00000001687:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.1=100)
A:
NA
C2:
PF0006920=Pkinase=PD(10.7=75.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]