GgaINT0126163 @ galGal3
Intron Retention
Gene
ENSGALG00000001118 | Q5F3L5_CHICK
Description
NA
Coordinates
chr17:10086220-10090924:+
Coord C1 exon
chr17:10086220-10086333
Coord A exon
chr17:10086334-10088916
Coord C2 exon
chr17:10088917-10090924
Length
2583 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
AATGTCTTTCTGTCTTTCAGCTC
3' ss Score
11.44
Exon sequences
Seq C1 exon
ATGGCAGCTCTTCAGAGTCCTTTCTATGGAGATAAAATGAACCTGTTTTCTCTTTGCCAAAAAATAGAGCAATGTGACTACCCGCCTCTTCCAGCTGAACATTATTCGGAGAAG
Seq A exon
GTAAATTGGGAGCATTTGTGCAGGAGAAGTGGTGGGGGTGTGGGGAAGAGCCTCTCCATCCTGGGTGTGGGGTGGGGGAGTGCAGCACTGCCCTGCAGCTGCCTGGGGAGCTGCTGAGCCTCTGAATATCAGCACACTGAAGTAAGGCAGAAAGGAAGATTTCTTAATGTGGTTTCTTAACGTGGAGAGGATTTTAAGACTGCGAGTCTGTTATGTTGGCAAAAACCAACAATGAACCGTGGGAAAGCCCTCTCCTTTGCTTCCCTTTGCTTAAAATAACATACCATGAAACCGTGCTTAAAGTTTTGTTCCAGCAGTCTTCAGCTTGTTACAGGGAGAAGTTTTTTCTACTTTTTACTTGTTTAAAATGGGGAGAAGAGGAAAACAGTTTAATTACTAAGATAATCGTTGATTCCCCAGGCTGCATAAGGGGGATTTTTGAAGTCTGGGTTTTATGTATATGGAAGTAAGGGGTGGAGAGCAGGAGCTGAACTGGGCTGTATTAAAAAAAATAGAACTGCTGCTGTGCATTGGTCGCTCTGTGACGTTGCACTTGGGCTGCAGACATGAGGGTTGTTGTTATGCAGGGCCTTTTGAGCTGGTTTTTTCTGATCTTTTTTTTTTCCTTTTCCTTGGTAAACCAGCTGTTTTCCTTTCTCATTCAGTTGTTGGTGCCTCCTATTTGAAAGGAAAAGGCTAACGTAATGTTAGGTGATGTTTTAAACTGTAGGCTCTGCAGGGCTGAGCTGTTTGGGCTGCAGAGGAGTCTGCCTGCATCGCACTGAGCTTCCCAGCTCCGATCCGTGGGCAGTCGTGGCGCAGTGCTGTCCCATCCTCTGGGCTGCCGCACAGTTTATGTTCATTCTCTCTTGCGAAGGAACGCTTACAAAAAGATAATTGGAGAAGTGTTGTGGAAAAGTGGATTATTTTTTCCCAAGCTGCTGTAGCAGCACGTCCCGGCTCTGTGCATTCACGTTTGCCGTGCTGTTGTAGCGTGCAGCTCAGGATATGCCTGCTGGCAGCAAGAATTAGTGTAAGTTGACAGATGTGTTTCCTGTCTTTACAATTACTGTCTGTTTGCTTCCCTCTGGCAGTGCTAAAGAGTGTGTGTAGTGTAGTGATACAATCCAGGGTGAGAAGGATGGTTTAAAGCTCAAAGGCGCCAGGTCCCAGAGAACCAGACTCCAGATGGTGTTCATGCACTATTAACAGAATGCCTGACAAAGTCTAAGAGGGCTGTGCCTTTGGCTGTAGCTGTATGAGCTGCTGCTGCCTACGTGAACCACAAAGAGCTCTAATTTCCTGAGTCTTAGAACGTGTCTCTGCCATGAACACTGTTTGTTTTTGTGCTGGTTTTAAAGGTTGGCTTTTCAGATGCTTCTGGAGTGCAGAGCTGAAGGAGAGGTGGGTTGGTGTCTTCCAGCAGCTGAGCAGGATGAGCCATTGGGTGGGAGCCCTTGTGCTGCAGGGCTCGGGAAAAAGCGTAGCAGCGCCTTCCTGCAGCAGTAAGTTGCACCGGCAGGAATCAGTGCTGCACACGGCGGCTGTCTGTCCCTGTGTGGACATGTTCATTTTCCTTAGGCTGATGAGGCACATTCTTTGGGCCACTCCAGTATTGCCACCGGGGCAGGCTTGGTAGTGGTGAGGGACAGCCGCCCCTCCATCCTCTCCCTGGGGCAGAGATGAGTATCAGCCAAATGAAGCCAGCAGAGTGCTTGGTGACGTGCCCCCAAACAAAGCGCGGGGAGCTGCTGACCCCCTGCATGCTTTCCTTGCAGCACTGTTGTGGATGAACGGGACAGAGCATTAATTGAGGAATGCCTGCTCGGGTGGTGTTGCCTTTCAGTGATGGCCTCCTGGCTGTGGCCTTTTCTCCAGTCTAGATCTCATGATGGACTGGAGGAGCTGAGACTGATTCGTTTTGTCTCAGAAAGATGCACTGGTAATTGTTGGCACCACTTGGGGCTGCATGTCCAGGTCAGGTCTGCCAGTTCCTGCTGGGATGGCTTCAGGCCCCGCAGCGACCCGGCGCTCAGGCTGCAGAGCTGCGGCCTCATTTGGGTACGTTCAGTAATGCAGCTGAACTGTGTGCTTGATAGCTGTAGGGTCATGCTTTTAATTACCATTAAAATAATTGGCACTGTGGCTACTGGGAGGATGTGAGAAGATCAGAGGCTCAAGGCTGTTTCTCCCTATGCCTCGGGGGTACGAGCAGCTTTCAGTGTCTGTGTAATTAAAAGCTACAATCTTTCATGTGCACAATAAAGAGGGTAGGGAGGTGGGGGGTACTTCAGCCCTTCTGCATTTTATTTATTAAACATAATCAATGACCGGTCTCTCTCCTTCACAGAGGTTCTCGAGGAAATGCTGGGGTCTGACAGCCACGCTCGGGCATCCTGTATCTTAAGATGTGTATACAGATTAACTCTGGTTCTTCCATAGAGGTGGGGTGGAACAGAAGCGTGCAGCATCAGCCACAACAGCTGCACGAAGGGCTCTCCGCTCCCATCTGCGGCAGCCCCCGATCTTCTGCCAGTAAGAAAAGCCGATGCATTTCTGTTCCAATGTCTTTCTGTCTTTCAG
Seq C2 exon
CTCCGGGAGCTGGTCAGCATGTGCATATATCCCGATCCAGATCAAAGACCTGACATTGGTTACGTGCACCAAATAGCAAAACAAATGCATGTTTGGACCTCCAGCACCTGAACCGTCTGCAGACACTCTCAAAAGCCAGCACAGCTTAGTCTTACTTGAATTTTTTTTCTCAGATGAAACCGACTGGTGCCTGGGCAGCGAGCGAGGGGAGCGCGTAGCAAGGCGCTCCATTATTTCTGCAGGTTATTTGACAAGGACTCTCACAAGGTGGTCATGCTTTAAAGTGAAGATTCTGTGAGGTATTGCAAGTGATTTATTTTTTTTTTTAAGCCAATAAGATGTTACAGGTGTAGATCATTTAAGGGTCTTTTCTTAAACTGTCGTGTGTAATGTAGGATAGACGATATTAACCGGGGTGTCAGCGTTGGGCGCACCTCTTCTATCTTAACTGTAATGTGAAATATTGAAATAATTCCTTCAGTGAAATCACTTTATACTAATGTAAGAATTGCAGTAGATTTTGTGTCGTTTGTATAACTGCTACTTCGCCTCTTCCGCAAATGGTTTATAGCAAATTTCAGTTTTTACTTTGTGTATTTTAAAGCATCCATTTATGTGTTTTTATTAATTCCCTCCTTCAGACTTAGAACTGGGAGGGCTTTGGGGGGTGGGAGGGGGTAGAAATGCATTTATTTCATGACTTTTTTTTTTTTTTAACTGAAAACTTAGAGTGAGTATTTTGCCGATGCATTTGGCTGTTAATTCAGCCACGGAGCTGAATTCAGCACACAGCTGGGGAAGAAAACCCACAAATCCTGTGCAAAGCGTGCTTCAGCAGGGCCTTCCTGAGCACCTGTTGTCCCAACTCTTCTGAGGCTGCAGGTTGTTATGAAAGCAGTGTTTCTCTCCCCCAGCTGCGTTTTTGGGAAGATGCTTGTACACGTTCAGTAGTATATTAGGTACCAGTAGGTAGAACTTTAAGCAAAGCAGTGTTTTAAACTATTTGAGGCGTACAGAAACCAAGTCAGCCAAAGGCTCCGCGTATCTTATTCCACACAAGGATCAGCCCCGTCTATTTAACTGTGAAAGCTGATTTAGAATGTGAATTTTTATAAAAATCTCAAGCTGATTAGAAGGGGTCATCTTCTTTAAATTAAAACCTTAAACCAACTAAATTCATTCATTGAATCAATGATTTGTTTCATTACTGCCATTGAAAAACATCGCCTGCTCCAGGAGCAGCCCTGGACGGGCGGCGCAGTGTTTGCAGTGTGTTGGGGCGCAGCGGTGCAGGCGGTGCAGTGCGGGAGCAGCGCTGCTCTGCTGGCGCTGAGCTGCAGTCTGTGCTGCAGTCCCAGTGCAGCCTCTGCCTCTGCTGGTTTTCTTCAAGAAATGAATACAAGCCTGAACTTTTTTTTTTTTCCAATAAGAGTAGGGTTAGAGGGTTATATACTCATATATGCTTTTAGTGGATTTTTTTAACTTGATTTTCTCTACTTAAAGGAAAATTGCAGTGCCATCTTCAACTACTTTCCACCAAATTTTGTGTATTTTTGTAGGGTAGCAAGGAAAACTACTAATTGCTGTGAATGATGTTGGTATCATTAATGCAAGGTGCCATTTTATCGTGGCTTCTCAGCAGGAAGCTGAGCCTGCTGCTCTCCTGAGAGCCCAAGGAAATTCAAATCAGCACGAGAATGGAGGAGAGGCGGCGCGTTGCTTCCCACATTCCCATGCCAACTTGTTTAATTTATAGCCATCTTCTTTAGAAATTCTTGGGTGTAAGACTTCAGACTGTCACCTTTACACTGCAGGTTTCCTTTAAGCCATGGCAGCAGTGGGCCGGGCTGGCTGTGCTGTGCTGCTGGTGGTGGAGTACCAGCAGAGGGGCGCACAGCTCCAACTGCAGTGCCTCGAGCGCTCCGCTGTCGTGCTACATAAAATTTATTAGTGCCTATAAGTAAATGTATTTCAAAAGGTAATTTTTTTTGCAATTGTGCATTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001118:ENSGALT00000001687:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.1=100)
A:
NA
C2:
PF0006920=Pkinase=PD(10.7=75.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]