DreINT0103746 @ danRer10
Intron Retention
Gene
ENSDARG00000037963 | nek6
Description
NIMA-related kinase 6 [Source:ZFIN;Acc:ZDB-GENE-040724-133]
Coordinates
chr21:8265063-8267744:-
Coord C1 exon
chr21:8267631-8267744
Coord A exon
chr21:8265186-8267630
Coord C2 exon
chr21:8265063-8265185
Length
2445 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
ACACACCTCTTCTGTTTCAGTTT
3' ss Score
9.31
Exon sequences
Seq C1 exon
ATGGCAGCTCTGCACAGCCCCTTTTACAGTGACAAGATGAACCTGCTCTCGCTGTGCCATAAGATTGAACAGTGTGAATACCCACCTCTGCCAACAGAGCACTACTCACAGAAG
Seq A exon
GTACAACACCATACACCTCTACAAGTCTGCGTTCTGACAACTAGCGAGCTAAAACAAAGACATTTACTTCAGCATTTGGAGTGGCGATCCTTCCCTTCTTGAATTCTTTAGGTGAACAAGTTAATCCACCTAAAAAATAATTTGCTTTTTGGTAATCTTCAATCAAAGGCTGACCATTTGCTTTTACATTTGGAGTTGTGGTCCTTCTGTGTTCTCTGAGGTCAAGGTCTCTGTTGACATCAGCTTAACTTTTCAGCCATTTTATATTCTTAACCATGCCCCTCTTACTCTTAGTTTGCTATGAGGGAATGATTCACTAAAAGAAAGCCCCGCTCCTACTCAGTATTCCATTTCATTTGGAAATACATCAACATACTGAAATAAAAGTCTCAGCAACTGATCACCTCTGATCATTTTAATATATTGTTTGGGTTTTATTTATTTTAAAACACAAATCTTACTGACCTCAAACCTTACTGACCTTTTTAAACAGAGTTCATCTCAACATATGGGGTGTCCAAATACAGTCCTAAAGGGCCACTGTCCTGCACAGTTTAGCTCCTTTTTGCCTCAGCACACCTGCCTGGAAGCTTTTAGTATGACTAAAGGCCCCAGTATCCTTCAGACGAAATTTAAAAAAGCACAGAAATAACGTCATGTTGAACAAAATACATCTAAAATTAAGTTTGTTTTGAGTTTGTAGGTTGCTAGGCGACCGTTTTCTCACAATGACAAGCTGACAAAAATCTGTCACTGATACAAGTTTTAATTATGGAGAATTACAAAACGTCCCCCACAGTCCAAAGACATGCGGTACAGGTGAATTGGGTAGGCTAAACTGTCCGTAGTGTATGAGTGTGCGTATGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCGCTGTGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGTGACCCCAGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATGAATTGCAAAACACTGCAGTGTTTGGGTGCTCTGTGTATGTCTGAGATAATTAGTCTACCAAAAAGTGTATATTTCATACAAGCTGAAACTGATCTGTCAGTTCTGGTCACGTGACTCACGGTGCACTCACTGTATTCATTCATCTGCATTGCTCTGGAAGGTCACACACCTCCATTTTAAATAACAAACTTGCGTGAACTCTAGAAAAGACGCAATATGCGAACGACCCCTAAAAGGCCACCATCATTTGCGATCTCCAGCAGTTGATCTTTTTGCACAGACATACTGGATTCACATGATTTGTTGACAAATGGGTAGTGGATCCATTTTTTGGCCCAGTTCACAGGTCCTTCACTTGGCCTTTTAACCTTAGCAAAGAAACTTTCCAAAGACGTTCATTTCTTACTCTTTTTGCTGCTTCTGGGTTAAATTTGGGCGCTCAAGTGACCGAGATGCAAGAGAGATAATATGGTCGTTTTTCAGAATAAAAAGATTGTTCAGACTTAGATAATAAATAAACAGAAATAATTAATGATTTCTTCTGTGGCCCGGTACCAATTGATCCACAGACCTGGCCCAGTGGTTGAAGACCACTAAAGTAACACATTTACAATCACACCTACTGCAGCCGGAGGTGTTGGAGGGTTTGAAGTCAGTATATCGTCCCTCAGCCTTTGCAAACTTCTTTGTACTCTCAAGCAAAGCACGAAAAAGAACTTTGAAGTAAACCGGGGCCTTAAGACCTTAATTAGCTGGATCAAGCGTGCTTAATAGAGTTGGAGCTAAACCATACCTGCCAACACTCCCGTTTTTCTTGGGAATCTCCTGTATTTCAGACCCATCTCCCGCCACCCTCCCGTTTTGTTATTTCTCCCGTAATTTCACCCGGTCCTCAACTTTTTGGTACAGTAACACTGTAACACCACTGAGTTGTCAACTTTGGTATAGTATCTGATTGCAGCGGCCACTCAAAACCCATTCAATAGTACGGTAATTAACACCACAGTATAGTTACTAACCCGGTGTCCTGACATTTTATGCTGCCCCTCAGGTTATGCTATCAACACTGTATTTGAATGGTTCTGAGGTTGGGGATTAGGGCGATATTACAGCTTCATATCACACTACTCCACATTAAAACTTACTCTGGTAGCAAAATGTGATGGGTTGCCTATTGCGTCTTCGATATGTGCTACCTACATTTTGAATGGGAGGTAGGACAATCTGACAAGGTAGAACAAATTGACAGAACACCGGTGATACCCCTGGTCTCCCAGAATTTCAGAGACAAATATTGGCAGGTATGAGTAAACTTCTCAGGACAGTGGCCCACCAGGACTGAATGTGGACACCCCTGACATAAAACCGTGCAATACCATTATCATACAAATGCACCAAGCGAGCAGCTACAAATCTACACACCTCTTCTGTTTCAG
Seq C2 exon
TTTAGAGATCTGGTCAGTATGTGCATCAACCCAGAGCCCGACCAGCGGCCCGACATCAGCTTCGTCCTGCAGTTTTCCACACAGATGAAGCTGTGGACGACCAGCACCTGATGCAAACACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037963:ENSDART00000132599:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.2=100)
A:
NA
C2:
PF0006920=Pkinase=PD(10.4=71.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]