RnoINT0100289 @ rn6
Intron Retention
Gene
ENSRNOG00000010897 | Nek6
Description
NIMA-related kinase 6 [Source:RGD Symbol;Acc:727779]
Coordinates
chr3:22884743-22887462:+
Coord C1 exon
chr3:22884743-22884856
Coord A exon
chr3:22884857-22887238
Coord C2 exon
chr3:22887239-22887462
Length
2382 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGAATGGTCTTTCCTTGCAGCTT
3' ss Score
8.39
Exon sequences
Seq C1 exon
ATGGCAGCTCTTCAGAGCCCCTTCTATGGAGATAAGATGAATCTCTTCTCCCTCTGCCAGAAGATTGAGCAGTGTGACTACCCGCCTCTCCCGGGGGAGCACTACTCTGAGAAG
Seq A exon
GTGAGCACACGGGGCCGGGCCTGGTGCACTTCCGGGATGGGGGTGGGGATTCTGAAGTGCCTGAAGTTTGTAGGATGGCAGCAGCAAACAGATGCCCTACGACCTATTGCTAGGTTAGTGGAACCGAGTACCAGGGAGGTCAGAGGTGACCACCCTGGGCTCACTGGTTGGTCTCCTGCTCTGGCTTACAAGGCCCGTAACTATGGATCTCTGACTTTCATATTTTATGCTGGGTGCAGGGGCCCTGGACAGTTACTGGCTGTGTGAAGCTCATCCTCAGATCCATCATTTTTATAAATGGGTTAAATTATATCTCCCTCGTGAATAAACTACAAAGGACAGCTGACAGGTCTCTTGGCACAATAGTGCCTCAGGGCACAGGCAGACTCCCTTCACTGTCCTTGAGGCTCGGCTTCCTCATCTATAACATGGGGTCAAAACTACAATCTCCTGTTCTACCACCACCATCAAAAGTAGCAATTGGAGGTATCAGCTCCATGTGAATATTTGCAAAACATCTGTGATGTCTGTTGACAGTGGATGCTGAAGGTGACAGTCTAAGGTCTTCCTGGGGCCACTCTGCAGGACCCTAGGCCACTTCCCCATAACTCACTAAGGCACTGGCTCTCAGCCTGTGGGGGTGGTGCATCAAATGACCCTTTCACAGGGATTGCATATCAGATATCCTGCATATCGTATTTACAGTTCATTAACAGTATCAAAATTACAATTATGAAGTAACATAGCAATGAAATGATTTTACAGTTGGGGTTACCACAAAAGGAACTGTATTAAAGGGTTATAAGCATTAGGAAGGCTGAGGACCACTGCACCAAGTCCATCATCCAGATGAGTTAAGGCTTTACAAGGAGCACCTTGCATATAGGGGCAAAGCCTAGGCAGAACCATGCAGACTCCAAGCCAGCCTGCAGGCCCCCTGGCCTCACCCATGCAGATGGCCACCCCTGAGGTGGGAAGGACACAGGAAAAAGAGAATTGTACATCACCCCTCTCTTCCATCAGCTCCAGTGGCTGGAGGAGTTCTCACTAGCCATTCGGGAAAGTATCTGTGGTCTGAAGAACAAGCGGGCGGGAAAAAAAAATGGGTTACTTTCTTCACAAAGTTTGTTGTGCACTAGCTTGTTCCTTTCCTTGTTTACTCTAGAATTTCTGCACTACTAGAAGACATGGGACTTTGGCTCTAATCAGTTCTGCACTCCTGTGCTAGTCTGCCAATGGGTACCACTCACCCCACTTCAGTTGCAAGGCAGAAATGAAGACCCCCAGAGCCCTTAGCTTTAATTTCCTAAGGCAACCATTCCATCTCACTAGATATGTGCCTGGCAGGCAGCAGCTCCAGATTCTGCTACTTAGCACAGGGTCTGTCCCTAAACATACCCTACTTTTAAAGTTATCATCATGCTGTATTATTTTGTTATTTTTTGTTGTTTCTCTTTTGGATTGCTTCTAAGTGATTGCAGGGCAGACTTCATCTTGACCTAGCTTTCAAATTTTCACCTGATGGGTCAACCATGGTTCCCTTCCAAAACAGCTTCAGGGATCACTGTCTGTAGTTGATCTTGTACTCCAGATAAGTTGCATATATCATCGTCATCAGCTCATGGATTCCTAGTGTTTTACACAGCAATGAATGGGATCACAAAATGGGCCAGTTAAAGCAGCTCAGTGCTTCAGAAGTTCAGGACTGACCCCCTGAGCCTGAAGTGGATGCTGCAGCCCCAGGGCCTCTGGAACACGCCTGGGCCCTCCTCAGACTCTTTCCTGAGTCCCTAGGACTCTCTGGTCCAGGACTTCCACCTCTCATATTTGCTAGTGACCAACAGCACCCCCAGCAGTAGGCACTGAGATAGAAAATGTTGCAGCCAGCCCAGTGGTGCATGTTTAAGACCCGGGCTTTTTAAGGTCATTATTTTAATTACCATTAAAATAACTAGCACTCTGGCTATCAGAACTAAAGGGATCAGAGGCTTAAGGTGCCCCTCCCCCACCCTGGCGGGCAAAGCCTTCAGTGTCTGGATAATTAAAAGCGTGTCTTTCATGAGCACAATGAAGAGGCCAGGGGGTGTGCAGACTGCAGCCTTGCTGCATGTTAATGCATTTATTATGATCAATAAGCCCTTTCCTTGAGTTTTCTCTGGTTTGGGCTTTGTGTGACTGACAGCGGACATACATGTGCACAGTTGAAAACTGAAGGTTATTTGAGGGTAAAATTCTCAGGGTCTCAAAGCATCACCTTTGGAACCAGATAGGCCTATGCACGTGTGGGATCTGTGTGACCATGTAACTTACCCTGAAAAGTACTGTTCACTTGAAACCATCTGCAGTGCACTGTAAGACTAACAGAATGGTCTTTCCTTGCAG
Seq C2 exon
CTTCGGGAACTGGTCAGCATGTGCATCTACCCCGACCCTAACCACCGACCTGACATTGAGTATGTGCACCAGGTGGCTAAACAGATGCACGTCTGGACATCCAGCACCTGAATGCCACACCTCAGCAAAGCCAAACGCCACGTGTCTTACTTGAGTCCTCTCCCCAAGTGGTACCTGGAAGCCCCCACAGCCAAGACCAGAGGACTCTCAGCTGCCTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010897:ENSRNOT00000014630:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.2=100)
A:
NA
C2:
PF0006920=Pkinase=PD(10.0=70.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]