MmuINT0113100 @ mm9
Intron Retention
Gene
ENSMUSG00000046618 | Olfml2a
Description
olfactomedin-like 2A [Source:MGI Symbol;Acc:MGI:2444741]
Coordinates
chr2:38813206-38816105:+
Coord C1 exon
chr2:38813206-38813391
Coord A exon
chr2:38813392-38815234
Coord C2 exon
chr2:38815235-38816105
Length
1843 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
CGTCTACTTTCCATATGCAGGCC
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTCGGGAGGACAGCTGTGAGGGCACACTCAGAGCTGTGGATCCCCCTGTGAAACACCACAGTTATGGGCGCCATGAGGGGGCCTGGATGAAGGACCCTGCAGCTCTTGATGACAGGATCTATGTCACCAACTACTACTACGGAAACAGCCTGGTGGAGTTTCGAAACCTGGAAAATTTCAAACAAG
Seq A exon
GTCAGGGAAACTGGGAGGAGAAGGGGAAGGATGTGGGTGATCTGGGGAGGGCCTCCCATAAGACTCAGCCTTCCTGTGCATTTTCAATGTCCACCCTGCCCTAGTTCCAGATAGCCACCCCTGCCCAGGGAAGGGTGTCTGGGGGCCCAGAGAATCCTGTTAGCCATTGCTGATAACTGAGTACAGGGCCAAAGGAGATAAATGTCCTGCCTCATGAGGCGTGTGACTTGCTAACAAGGAAAATAGGAGAATGGTAAGCTTCTACTTGCTGAGTGTTCTATGCCAACTGCCTATGTCTGTCTGACCTAGAGTCTCTATTACTGCAATGAAACACCATGACCAAAGAAACTTAGGGTTTATTTGGTTTACACTTTATTTATGTATTTATTATTGTATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGAGTGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGAGCCATCTCTCTAGCCCCATGGTTTACACTTTCAGATCACTGTTCAGCAACAAAGGAAGTCAGGATCAGACCTCAAGCAGGATATGAACCTGGAGGCAGGAGCTGATGCAGAGGCCATGGAGGGGTGCTACCTACTGGCCTGCTTCACATGGCTTGCTCAGCCTGCTTTCTTTTTTTCTCTTCTTTTTTGTTTTGTTGTTGTTTGTTTATTAAGACAGGATTTCTCTGTGTAGCCCTGACTGTCCTGGAACTTTCTCTGCAAACCAGGCTGACCCCAAACTCAGAGATCCTCCTGCCTTTATTTCCCGAATACTGGGATTAAACACATATACCACCACTGCCCAGCTGCTAATGTCCTTTTAAAAACTGACTATGTCTGTGTCTGTAGCAGCTTACAGACTGTTGGATGTGTCAAGTGTCAAGACAAAGGGTTAGGGGAAAGCCCTTCACTATATCCTACTACATCCTAGGGAGGTCACACTGGCTTAGCACACTGAAAGATGTAGGCATTCAGATGGGGAATAGCAAACCTGACTCAAGGAATAGCATATGCAAAGTCTCCAAGACAGAGCACAGGACCCAAGTCACCCTGCTCCTCATTCCTAGGTACCAGTGTCACAACTGGGGACCCAGAGCCCAGGACTCACAAACACATGAATGATGTTAGTGCTTCCTTCATGACACCATCTTTGTGAACTAGATGATGGACCTAGGTCTAGCCACATGGTTGACTAAGTTGGTGCAAAGTACTTGTTGGGCACTGGTGAGCCCTTGATGGTCTCTGTTGCTGTGATAAACCCAAAGCAATTTGAGACAGAAAGGGGTTACTTTATACTTCTAGGTACCAGCCCATCACTGAGGGAAGTCAGGACCAGGAAATCAAGTCAGGAACCCCCGAGGAACACTGTTTACTGGCTTGCTCTCTTATTTGTTCAGAAGCTCAGCTAACTTCTGTACTATTTGTCTTTTTTGTTAGCGTTTGTTTGGTTTTGGTTTTTTGAGACAAGGTCTCACTATATACCTCCAGATGTCTTGGAACTCACTCTGTAGAGATCAAACTGACCTCAAACTCACAGAGATACATCTGGCTCTGCCTTCCAAGTGCCAGGATTAAAGGCATATCTCACTACACCTGGCCCAGCTAGCCTTCTTATACAGCCCTGACCACCTGCCTAGGCATGGAACCACCCACGGTGGGCTAGACACTCCATCTCAAGCAAAATAATCTCTCACAGATAGGACCACAGGCTGGGCAGTTCCTCTAGGTTGTATCAAACTAGCCAGAACAGGGTACCCTGGTATGACCGTCTACTTTCCATATGCAG
Seq C2 exon
GCCGATGGAGTAATATGTATAAACTACCCTACAACTGGATAGGCACAGGCCATGTTGTGTACCAGGGTGCCTTCTACTACAACCGTGCCTTCACCAAGAATATCATCAAATATGACCTGCGCCAACGCTTTGTGGCCTCCTGGGCCCTGCTGCCTGATGTGGTCTATGAGGACACCACACCCTGGAAGTGGCGTGGCCACTCGGACATTGATTTTGCCGTGGATGAGAGCGGCCTGTGGGTCATCTACCCAGCTGTGGATGAGCATGACGAAACACAGCATGAGGTGATTGTGTTGAGCCGCCTGGACCCAGCAGACCTCTCTGTGCACCGGGAGACCACGTGGAAGACACGGCTGAGGAGGAACTCCTATGGGAACTGCTTTCTGGTGTGCGGCATCCTCTACACCGTGGACACTTACAACCAGCATGAAGGCCAGGTGGCCTATGCGTTCGACACCCACACTGGCACTGATGCTCACCCACAGTTGCCCTTCCTCAATGAGTATTCCTATACCACCCAGGTTGACTACAACCCCAAGGAGCGGGTGCTCTATGCCTGGGACAATGGCCACCAGCTCACTTACACTCTCCACTTTGTGGTCTGAGTGGGCATCTATGTTCACAAGGGAGAGCAGCAGAGGAGAAAGGGCTATCCCTAGCAACTCTTGCAATTGATATAAGTATCGTTTGGGGGTGTCCTGGGCTAGGTATTGGCTTTGATGGCTTTGAGTGCTTTCTCAGTGCCCAGTAGGTGACACTTCCACAGCAACGCTGCGCCGGGAGCTTTCCCTGCGCTTTCCCTTTTGACTCTCTCTACTTCTTCCCTTAAGCCTGTTGAGTAGATGAAGTGACTAAAGCCCAAAGGAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046618-Olfml2a:NM_172854:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219111=OLF=PU(21.2=85.7)
A:
NA
C2:
PF0219111=OLF=PD(78.4=99.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACTCAGAGCTGTGGATC
R:
CCAGGGTGTGGTGTCCTCATA
Band lengths:
350-2193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: