DreINT0015804 @ danRer10
Intron Retention
Gene
ENSDARG00000104539 | OLFML2A (2 of 2)
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
Coordinates
chr21:8050462-8059574:-
Coord C1 exon
chr21:8059389-8059574
Coord A exon
chr21:8052993-8059388
Coord C2 exon
chr21:8050462-8052992
Length
6396 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGG
5' ss Score
2.35
3' ss Seq
CCCCCTCTCATTTCCTGCAGGCC
3' ss Score
12.92
Exon sequences
Seq C1 exon
TGAAAGAGCACAGCTGTGATGGGACACTGGCTTCAGTGGATCTGCCAGTTAAGCAGCACAGTTACGGCAGGAACGAGGGTGCCTGGATGAAGGATCCAGCCGCCAAAGACTCCAAGATCTACGTCACCAACTATTACTATGGAAACAACCTTGTGGAGTTCCGGAACTTGGACAACTTCAAACAGG
Seq A exon
GTGTGGAAGAATTCTGATCTACAGAGAACGCACATACAAATACTGCACTTATTTATTCAAAACAGCTGCACTGATTGGGTGACTCAGATCAATTCATATGGGGCTGTGTGTGTGTGTGTGTGTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAATTAAGGCGAAACACTGTGGGCCAAAAACATTTTCTTATGCACTAGCTAATTTTAAGATTTTGGCTTTTCATGTTTTTTTAGTGTAATATAAAGTAAACATTTTAAATACACATTTTTTGGTGGTTAGTGTCAGTCTGGTAATTTTAAGGGCAACTACAAGCTATTCTTGGACAAAACAGTGACAAACATTTGTATTTAGAAGATATAAATCTGATTTAAACATGTAAAGCTTGCAGTTTGTCATGTCCACCTAAAATGATCACTGATTTTTTTCACGTCATCATACTTCAGTCTCTCACCAAAAATTCTGACCAATCAAATGCTCTCTATGATCCGACATGCCCTGCCCCCTTTAAAACGCTTCTCATTAGCTTTTCATTTGATGCACTTGAGCTCAATAGCTACGTTTCCATCCACCATTGCATATGCGCATAAAAAAGGGTTGAAGGAAATGTCAGGATGTGCATACATTTTTAAAATGCGCATAAAAAATTTACTTTTTACTGTTGATATTTAGCGCCAGTTAATCAGGAAGTGACGATTTTGTTCACTTTGACTCGTTGGATGGAAACGCTGCCTTATTCCTACATCTTTCATGCGAATATCCAGTTTTGCGAATTAAGTTCATTCGCATTTTTGAATGGAAACATAGCTTATGACTCTCACTACCAGAGCTGTGATTAAACAAAATGCTATTGGCTGTTTTCTAAAAGGGGAGGAGCTCTGTTACACCCTCTTTTCGTCTTTCAGTTGAGATTATGTCACAAAATTGAATAATATTGCTCATTACAAAGCACCTTTTTTGGTCCTGTAAGTGTTTATTTTGTCACACTTTATCAATCTGTGTCTGTGGATTTCAATTACAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTCTTAAAAAAAACTTTTTTTTCCTCCATTGAGCCACAAATCTCCACCTCAGCAGCTCTCATAGATCAAACTTTACAAACAAAAGTTTTATTAATATCTATATTCTAATGGTTTTTACAATGGTAAATGTTCATGCATAATTTGCCTGATAATATATATTTTATTCTACAAAATACAAAAATATTGTGATTTCTTCTGGTTGTTTACAGTATTTTCTGAATTATGCAGCGTTAAAAGACATTCCTAAAACCCCACTTTGAAAACCTTTACTCTAAAAATATGTAAAATTAATCCAATGTTTTGATTTTTGTGCTAGAAATGCATGCAAATTAGCATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATTTTTTCATTATTATTATTATTATTATTTATTTATTTTTATTTTTTTTCTCCAGGGGGTGCTGTGCCCCAGTAGAGCTTTATGTCTGGCAACGGGTCATTATAATGCCAATGATTCTAGCTCCTTTTCACACTAATGCTAATGATATTTACAGGGAGATATTATCAACAAATAAATGATCAGTTTGTGCGGTTCTTTGTAAAACAGCAAATAAATGCCACAAAAAAATTTGTGTCTGATTTATAATTAAATATGTTTGCCGTACCTATTTGTCTCTATATGGACAACTTTTCTGCTGTGGTCAGTTTGCTCAGTAGCTCACCTTGTACTGTGTTGTACTCGTTCTGCTGAGCGCTCAGGTTTGAGTCCACAAAAGAGATAAAATTAATATAAAATCAAGGTAAACTATGTGGTCGCAGTTCACTTTTCTTTTAGGTTGCTTTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTCTTAAAAAAAACTTTTTTTTCCTCCATTGAGCCACAAATCTCCACCTCAGCAGCTCTCATAGATCAAACTTTACAAACAAAAGTTTTATTAATATCTATATTCTAATGGTTTTTACAATGGTAAATGTTCATGCATAATTTGCCTGATAATATATATTTTATTCTACAAAATACAAAAATATTGTGATTTCTTCTGGTTGTTTACAGTATTTTCTGAATTATGCAGCGTTAAAAGACATTCCTAAAACCCCACTTTGAAAACCTTTACTCTAAAAATATGTAAAATTAATCCAATGTTTTGATTTTTGTGCTAGAAATGCATGCAAATTAGCATATTATATATATATATATATATATATATATATATATATATATATATATATATATATAATTAAAAAATGCCTTTTTTACACTTTTAAACAGTATTTAGAAAGCTTGAAATTAAAACAAAATCCCATTTTAATGTAATCAATCGACTGTAGAAGTCTGATGACAGCTATTAGTTATTTTTCTTTACCCTATTCACCTGCAGTGTCTTGCCTTAAAGCATTCACACAGTTTTTTTTTTTAATGAAATAATGACAGGGATTTTCCCTTGAAAGAATGTTTGGATACGTGTAATGTGTTATCAGATTTGGTGCTTCAAAATTGACAGGTTTGGGTGTGTGTTTAAGTTTGAAAGATACAGTTGATTTTACTGTTTGTTTGCCTGCATGTTTAGACTGCATAGACTTTATTTCCCTAATAATAGCCAGGGGAGTCATACACTGAATTTCTGCAGGGCTCGCCAGCAGCAGTCAGCAAGATAACTAAAGGAAAAACTCATTAAGTGCTTTATATTGGCTTTAGCTGAGCTCGTTTAATTTTCACATTTATATTCAGTCAAACCTGCAATTATTCAAAACAATACCAAATTCTGACTTAATTACATTTGTTCAAAAACTTCGAAAAGTATATACATTTTTTCCACAATGATGCCTCTTGTACATATTATCTTTTGGGAGAAGCCCATCTCATTTTGTTACAGGGTGGCATGTAAAGTAAAACGATGTGTGGATCGAAATGCAGCGTATAACGGAGATTTAACGAAATAAAAATTAACAAAAACTAAGACAAAGCAAAACAAGATCATGAACCACACCAGCATCATAGAACATTAACAATCCACAACCAAAGTGAAACACAAACTAGAATATATAGTCCTCCTAATAATTAGAATATTGACCACAGCAGTGTGTCTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCATGCGCTTCAGCTGGGACTGGGGAGATTAGTGCAAGGCATCCTGGAAGTTGTAGTGTGTGATGTGAAATGCATGTAGTTCTCCAGCGATCCGCAGTCGCTGGTGCTCGTTACACATTTCTAGTCAAAATTAAAACTTGCTGGTTGAATAAACTTGAAGTCAGAATTTGCCAGGGGTATTATTAACTTCAGGTTTGGCTGTACAGTATATATATTAGTTATGAACTGATACACCACTCAATACTGCATCCTAGAATTTTTAGAGGTGTTGCCAAATATTTTATCACTGCCTAAGTGAATCAAAATCAGATTGTCATGTTGTATCATTTAAAACATTTTAATGTGTTTAGCACATCTGTTTTTCATTACAGAAAATCCAGATGAGCCTCACATGTACAATCACATTAAAATCACATGTGAAATTTGTGGAACGCAAGTGTGAAACCCATGATCTGTAATTTGGAACATTTTCTTGTGAAACCTATATCTTTTTACAAGCTATACAAGGAAATATACAAGAAAAATATTTCCAAAACCACACATTTCCCATATTTCACATGAGTTTCACACTTGTTCCACCTGTGTTCCACAAATTTTATGTGATTTAATGTGATCGCATACGTGAAGCTAATGTTTTTTTTCTGTTAGGTTTGTAATCAGAAATAATGCAGGTTACATTTTATTTTAAAAGTCACAACTCACACCATTTAATACTGGCTTTTAACCTGCCAATTATTAAGATATTAACTGTTTATTAGCACTTATAAATCTTATTTTACACCCCTAATCCTACGCAAATATCTAAACCGAACTATTACCTTACTAACTATTAATAAGCAGCTAATTAGCAGTTTATTGAGCTAAAAGTCTTGATGGTTGATGGTTTTTTTATAGCATAAATTGTACATTGAAATAAAGTGTGACCAAAATGCATACTAATAACAGGTGTAATAACTGGGTAGCTTCTGTGCTATTCACATACAGTCTCTACATTATATGAAGGTACCCTCATTTCAGAAATATACTAATATTTTGATTCAATTCATTTTTACTTCTTGAACGCTTTAAACAATGTAGATTGTGTCAAAGCAGCTTAACATAGATGAAGAAAGAGACTTAAAGCCAAAATGTTTTGTGGAACATTCCAGCAAATCAGGCAGGCAGGAGAGTAGTGTATAAGGCTGATGTTGTTATGATACTTTTTAAAATATATATTTATGTTTTATACATTTTTTTTTTGTGAAAAATACAAAGTTACATATCATTATCTTTGTTATTGTTTTTTTTTTTAACGAAAGAGACGACAAAAAGAAATTAAAAAGCAAAGGGGAAAAATCATCAAAAAAAAATAAGACAAAAAAAAAAAACAGAAACGAGTAATAAAAGTGTACAGAAAAAAATGTCTTTACAACCAACTAAATGCAGTCATTCAACAACCACAATCAACTGTTTAAATATGTACAATTAAACAGTATAAGATAATAATAGTTAAAAGCAAATAAATTACTAAGAAATAAATTAAAGGCGAGTGCATTTATTAAATGGAAGACAAGATTGTAAAAGACAAAGTCAATTATAAATCATTGCCACTTTTTAATTAAATTAGTTTTCGCAAAGCATATGACCTTTTCTAACTTTAGAAAATACATGGTATCCACAAATCAATGTGAAAAATGAGATGTAGTTGGAGTCTTATTTGATTTCCAGTGGAGTACAATGCAGTGCCTAGCTAATAATGAGGTAAAGGCTAAAATGTTAAGCTGTTTAGAATTAAACTGGGACCTAATCTTGGGTAACCAAAAAAATGGTTAAATCGAGATGGAGCTATATTTACCTGCAACACCTTATAGTTATACTTCATTTATGCCCAATACCAATTCTACCCCTTAGCCCTTACCCTTACTTTTGTGCGTTCATGTAAAGAGGTAGGGGTGTCTTTAATTTTTTTTAGCTTGAAGGCGGATGGCTAAGGGGAAAGGCTAGATAGCCCTTGAAACTGAGATTTTCCAGGACCACACTTAAAACCAAAGGGTACGAAAATTTCCCAGAGTAAACCAGCTACAACGGCAACATGGCTGCATACGCAAGTCAGGAGATCAACAAATTATTATTTTTTGGCTTTATTAAGAATATTTTACAACAAACAAGCCTATTTTTTAATACATAACCCCGTTTGTACCTATAACTCCTGTATAGCAGTCCTGGCATCTGTCACTCGAAGACACACGAATACTCTGTCAGAAAAGTCTAGTGGCTGGGAATGAGCTTCTTACACTGTCTAGTAGGCTATAACGTTAATGTTGTTTTCTTGTGTTTACATAGATGAATATAGCCATGGTGCAAATGCACAGTACAGTTATGATCCTATTGCCACATTAGATCGTTATGATAACATAATATCATTACCTACAGCAGTCGCCAGTGTTAATCTCTTAGAAAGTAAGAGCTTGCAATGACATATTATGAAGTGTGCAGGTGTTGTAGTGCTCTCCCATTTCTTAGAAGTAAATTTTGAAGCCTTTCCCCTTCACATTCTGTTTCAATGGTCAAGGGGTAAAAAATAGAATTGGGATCGGGCCTTAAGTAACATTTAGCACTAGTAACATTTCCCCCTCTCATTTCCTGCAG
Seq C2 exon
GCCGTTGGAGTAATCTGTACAAGCTCCCTTATAACTGGATCGGAACGGGTCATGTTGTATACAGAGGAGGCTTTTACTATAACCGCGCTTTCACCAAGAATATCATTAAATACGACCTCAAACAGCGATATGTGGCCGCCTGGGCTCAGCTGCATGACGTGGTCTATGAAGACACGACACCATGGAAGTGGAAAGGCCACTCCGACATCGACTTCGCAGTGGATGAAAACGGGCTCTGGGTCATTTATCCATCAATCGACGAGGATTACGGACAGGCTGAAGTCATCGTTGTTAGTAGGCTTGACCCCAGTGACCTGTCGTTGAAAAAAGAGACCACGTGGAGGACGCGACTGAGGCGAAACTCATTCGGGAACTGCTTCATAATATGCGGAGTGCTTTACGCGGTGGACATTTACAATCAGAGGGAAGGAGAGGTTTCGTATGCGTATGACACGCTAACGGGGGCTGAAGCGGCTCCGCGTTTGCCTTTCATCAATGAATACGGCTTCACCACACAAGTCGATTACAACCCCAAAGAGAAGCTTCTGTATGCTTGGGACAATGGACACCAGCTCACCTACAACATCGACTTTGCAGAGCAGGAGAAGAAATAAAATCGTGCAAATGAAACGCGCTTATAACTGCCTCATTGGTTACACTAACCGAATGCATTCATGAAACAGGTCGTCATGCTCTCGTGAACTTTAATAGACACTTGTCAGAGGTTATATAAAGGGGATTATTACATAAGCTCTGCTCTATGATTGACTGCCAGTACTAGAATCCCAACAAATGCAAACTAAAGGCTTTGATTTGTTTCAAATGCATTAAACTCTATGAAGCAAAGTATAAATCAAGTGTTTTCCCGCTACATTTTTGGCTGCATCCGAAATAGACTACTACTCGAGTATATACTACATTTAAATTGACCAAATCTAAAGAATCTAAAGGCTTTGGGACTTGAGACTGCCCGTTCTGTAATTCGAACAAATGGAATCTAAAGGCGTTGATTCACATCAGTGTCCTAAATGCATTAAACTCCATGAAGCAAAGCATAAATCAAGTGTTTTCCTGGTACACGTTCGCTGCATCCGAAATCGCCTACTACTCGAGTATGTACTAAGTTTGACTTTGAGTTTACTAAATCTAAAGAATGTAAAGTCTTCGGTATTTGAGACTATTATATCTAGAATCCGAACAAATGGAATCTAAAAGCTTTGATGTTCCAAATGCATTGAACTCCATGAAGTGAAGCAGAAAATCAAGTGCTATCTTGCTACACTTTGGCTGAGTCCAAAATTAACTACTAGAGTTTGTACTACATTTGAATTTAAATCGACTAAATCTAAAGAATCTAAAGGCTTTGGGATTTGAGATTGCCAGAATCACAACAAATGGAATCTAAAGGCTTTGATTCGCATCAATGTTCCAAATATGTCGAACTCCATGAAGCGAAGCATAAATCAAGTGTTTTCCCGCTATACTTTGGCTGCGTCCGAAATCGACTACTACTCGAGTAGGTACTACATTCTAGTTTGAATTTACTACATATAAAGAATCTAAAGGCTTTGGGATACTAGATCTGCCTGTTCTAGAATCCCAACAAAAGGATTCTAAAGGCATTGATTCGCATCTATGTTCCAAATCTGTTGAACTCCATGAAGTGAAACATAAATCAAGTGTTTTCCCACAACACATTGGCGGCCTCCGAAATCGACTTGTACTCAAGTATGTACCACATTTGAATTTGAATTTACCACACAATCATTGGAAATTACGTTCTATATAGTATAAATGAAATTCAGATATACTACATCTGCCATTTGTCATTATCATGTGATCCACCCACGTCAGTGTCACTTCACTCTCATATATGAATTCTCTCGCATTGCATCATGGAGTAGCGTAGCGCCTATCAGATGCGCATTTCAGAATCTTGCCAGAAGTAGTAGGTCATCCGGGTACTTCTCGCATAATAATTTTTAAATACTATGAATTCGGACATACTACTTTCACATACAGTTTTTATCGTATATATATACTATATAGTATGGGAGTTTGCCATTTCGGACGCAGCATTTGTGAATTTTAAAGTGCAACAAATGATTGCTTTACGATGTGTAACGTTAACCACTACGATGCCACTGACTTTTCGAAGCCATGTAAGTAAATCTGCAGGTAACATTTTTTTAAGTTGTACATGACGCTTGAAATCCTAATGCAAAACATGTGAAAGGAGCTAAAGAGTTCAAAGTAACTAATCCAGGCACATTGGAAACACTTGCAGCTGCGTACATTTTTGCGAAGCGTAAAAAAATGCTGCTCCAGGATCATTTCATTGCACGTTTCAGATGACAAATCCACTAGAGGGCAGCGTTTGGATTTTGGCTAATTTGAAATATGTCACTTAGGGAAACTTTTGTTGCACATTTCAGATACACGTCCTTTTTGTACCCACATACAGTACACAAGGATGCGGGGTTGTTGTAGAGATCACCTAGTGACCCACTGACCTGAACCGAACCCATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104539:ENSDART00000171027:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219111=OLF=PU(21.3=85.7)
A:
NA
C2:
PF0219111=OLF=PD(78.3=97.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]