BtaINT0105590 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004848 | OLFML2A
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
Coordinates
chr11:95803852-95805530:+
Coord C1 exon
chr11:95803852-95804037
Coord A exon
chr11:95804038-95804925
Coord C2 exon
chr11:95804926-95805530
Length
888 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CATCCGCCCCCTGCACGCAGGCC
3' ss Score
9.43
Exon sequences
Seq C1 exon
GCAGACAGGCGAGCTGTGAGGGCACCCTCCGGGCCGTGGACCCCCCTGTGAGACACCACAGCTATGGGCGCCATGAGGGAGCCTGGATGAAGGACCCCGCTGCCAGGGATGACAGGATCTATGTCACCAACTACTACTATGGAAACAGCCTGGTGGAATTCCGCAACCTGGAAAACTTCAAGCAAG
Seq A exon
GTGGGGGACCCCTGAGACGGGAAGGGGGGGCAGGTCTGGGGAGCCTAGAGAGGGTTCCCCTGGAGACATGGCCCTTGTTTGCCTTGTGGTATCCTGTGGTCCAGGCTTCCCCAGCCTGGCCTAGCCCTGACTGGTCAGCCACCCCATGAAGGGGAGTCTAGGGGCACCCCCTAAGTGGAAACTCTGAGTACTGTTACCCTTGACAGTAAATGACACTCGCGAGGGCAAGACCACGTCCATCTTGTTTGCAGCACTTGCTGAGTGCTTATTATGTGCTAATCACCTGTGTGTATCAACTCATGGTATCTCCATAACTCCACGAGGTGGGGGGTTATCACCCTGTCTTACAGGTTAGCAGAACCCCAGGCCTTACTGGAGCTTCAGGTCTGGACAGGGAAGGGCAGAAATTTTGTTATCACATCTGGAACATGATGGGGAGAAAGGGTCAGTTAGACATGACCTGCCCTCCAGAAATGCACAATCTGATGTGTGTGGCAAAAGCTTTAAGAAACAACTTGGATATGGTGCTCGAGGGAGGCCTTGGGGCTGTGGGAGCCCAGCCTGGAGACCAGGGAAGACTTCCCAGAGGATGTGATGCTGAGGCATTCCCCAGGCAGACAGGATGGGAAATGGCAGTCTAGGCAGCAAGAAGGGCATGGGCAAATGCCCTGGTATCATCCTGGCCTATGCTGGTCCACAACTGGTAACCTTGAACCCTCTGAGCCCCCATTTGCTCCATGGCAAATGGGACAATGTCTTGAAGGGGCGAGATAACTGGCCCAGCCCCAGGCCCACAGCTCACTCCGTTTCCATTGCTTGCTGGTCCCTGGGATCAGTTGAGGCTTTTTCCCAGAGGCTCTGGTGTAACCATCCGCCCCCTGCACGCAG
Seq C2 exon
GCCGTTGGAGTAACATGTACAAGCTGCCCTACAACTGGATCGGCACAGGCCACGTGGTGTACCAGGGCGCCTTCTACTACAACCGCGCCTTCACCAAGAACATCATCAAGTATGACCTGCGGCAGCGCTTCGTGGCCTCCTGGGCGCTGCTGCCGGACGTGGTGTACGAGGACACCACGCCCTGGAAGTGGCGCGGCCACTCGGACATCGACTTCGCCGTGGACGAGAGTGGCCTGTGGGTCATCTACCCCGCCGTGGATGACCGCGACGAGGCGCAGTCCGAGGTGATCGTGCTGAGCCGCCTGGACCCCGGCGACCTGTCAGTGCAACGCGAGACCACGTGGAAGACGCGGCTGCGGCGGAACTCCTACGGGAACTGCTTCCTGGTGTGCGGCATCCTGTACGCCGTGGACACGTACAACCAGCGGGAGGGCCATGTGGCCTACGCCTTCGATACGCACACGGGCACCGATGCCCGCCTGCAGCTGCCCTTTCTCAATGAGCACGCCTACACCACCCAGATCGACTACAACCCCAAGGAGCGGGTGCTCTACGCCTGGGACAACGGCCACCAGCTCACCTACACCCTCCATTTCGTGGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004848:ENSBTAT00000006372:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.460 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219111=OLF=PU(21.2=85.7)
A:
NA
C2:
PF0219111=OLF=PD(78.4=99.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGCCTGGATGAAGGAC
R:
TAGATGACCCACAGGCCACTC
Band lengths:
358-1246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development