DreINT0108382 @ danRer10
Intron Retention
Gene
ENSDARG00000005648 | olfml2a
Description
olfactomedin-like 2A [Source:ZFIN;Acc:ZDB-GENE-081105-107]
Coordinates
chr8:41332026-41335285:+
Coord C1 exon
chr8:41332026-41332211
Coord A exon
chr8:41332212-41334680
Coord C2 exon
chr8:41334681-41335285
Length
2469 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GAATATCTCATCAATAACAGGTC
3' ss Score
5.28
Exon sequences
Seq C1 exon
GTAAATCTCCAGACTGTGAGGGGACACTGGCTTCAGTAGAGATGCCAGAGAAGCATCACAGTTACGGGCGCAATGAAGGAGCCTGGATGAAAGACCCAATGGCCAAAGACAACAAGATCTATGTCACAAACTACTACTATGGCAATAACCTAGTAGAGTTTCGCAACCTGGAGAATTTCAAACAAG
Seq A exon
GTAAATAAAAAATCAAGTCATTTTATCATTGCATGGTAGTTCAGCACTTATTTTCCCTCATTGTGCAAACCAGTTTAGGACACACTGAAACACCAAAATTTCACTGCACAATTAGCCTTCAAATGGCTTAAATTTGTCAATCAAATCATAAAGAAACCATGAGGAAAACTATTAAAAACAGATATCTATACATATATCAAGACCTACATCATTCAAGGGTACATTTAAAATCCAAGAAAAACAAGTTGTTCAGTCTATTATTTTTGTATATTGATGTATTGATTGACTTCCAATTGCAATAGAATACTGAGTATGGGGCCATGGCTTTCGATTTGCACATCAATCCCTCATAGCAAACTAACATTAAGAAGGGTGTGGTTAAGAATATTGTGTCTGAAGCCATCGAATTAATGTCATCAGAGAAGGATGCACTCCTAACTGATTGACAAAACATGAAGACTACCAAATCACTTTTTTTTTTTCAGTGGAATAACTTGGATGGATTAAATTTCACAGTATAATATCACAAATCGTCAACTTAGAATGATAAGGTTCTATCTGACATTTTTGTCAAAAGTGAGTTATTGAAATATACTTATTAATTGACAACTTATTTACATTATTGCATTTTTTTAAATAAGTTGTTTACATTTTAAGACTTTTTATTTAAAAAACAAATGTTGCACACATACTGTTTGCTATGGAATGCAAAAACTTTAAAGCTCATTATCTCAAAATCATTCAGAACGCAGATAGAACCTTATAATTAAAAGGTGAAGAAATGTAACATCACAGTCCAGTAGTCAGTGATCACTTTGTAAAGAAGAACTGTACACCAGAATATTTATGGTCCTGTAATCCACCATTGTAGTTTTGGTTGTCAAAAACATGTGTATGACATGGGTATAAACATGTATACATTCATATTTTCTCTAAGACAAGAGCCATATTGATTTACGATTAGCTAAATAATCTTATTTCAAAGCAAAAACAAGATTATTTTGCTTGTTTTATGGAAAACAACTGACTTAAAGGGGACCTATTATGCAAAAATCACTTTTATAAGAGGTTTAAACACAACATTGTGTGAATATAACCAGCCTCTAATGGTAAAAATGTATTAATTATATTTTTTATAATCACACTTGATAAAAACAGTCTAATGAAACACTTTAACATTCTCCATTTGTGCGTGTCATTAGAGAAGGAAAGCAACGAGTTAGTTAGTTATGACCCATTAGTTATGATCTTGTAGTGATTATTTACAGTTTTAACCCAAAGAATAACCAGGCTGTCAGATGAAAAAGAGCCGGAGTCAGAGGTTCAAATAAATAAATAAATAAATAAAGTTTACTGAAGAGGCGAGGCAGTGGCGCAGTAGGAAGTGCTGTCGCCTCACAGCAAGAAGGTTGCTGGTTCGAACCTCGGCTCAGTTGGCGTTTCTCTGTGAGGAGTTTGCATGTTCTCCCTGGTGTGCGTACAATTCTGAACAATATCTTAAGCATATTAATGTCAGACATCCAATAGACTGTTTAAAGCTGACCCCCAGACCTGTGAAACGGGTCAACAATCAAATAGAACACACACACACTTAAAGTACTATCTGTTTCTTACCCAAGCCTGAGTGTATTCTCTGCCATCTTTATCAAAACTGGTTAAAAACCGGTATGATCTACATTCAGGCAGTTATAATATCTCCGTGACCTCTGACCTAGTTTGGTGGCTCTTGAATATAGTTACAAAGAGACAGGCAAATGCACTGAACACTTTTACATAAAGCATGTTAACTTATTCATTAGTTAAAATCATTTCAAAGTTAAATACTCATTTAAATAATCAAATAATCATATTTAATAAAAGTTATGGGAAACAGGATGATGAGAAACGGATAAAAGTTGATCCATGCTGGAAGGTAGGAAGGTAGAAATCCTTCAATCTCTCCATAATTAGCATAATAACATAATAGCCCTGAGTGAGAAGCATCCGCCATTAGAGTTTACACCTGCTGAAGTTAATGTCGGCAAATAAGACGCATTATAAATGTGGAGTTTTAGGATCCACAAATGAACACTGTAATCTCCATACAATGCTTTTTTCTGAGGCACTTCTTTTCACAGTTTACAGAGTTTGTAGCTCCACCCTCTTTAAAAAATAAAAACAGAATCTCATTTGAATTTAAAGCATCAGTTGCCAAAATGCCACAATTTGGATCAAAGCCAGTTTTCAAACATTATTTGTGGGGTATTTTGAGCGGAAACTTCACATACACACTCTAGGGACATCTGAGACTTACATATTATAAAAAGGGGGCATAGTAGGTCTTCTTAAATGAATGTTGTTTTTTTAGATATTTCAACTGGAAACCAGATGAAAACTGCATTTTTTGTACAGCTCAGTAGAAATGAGTGGCATAATAAAGCATATCAAATTGAATCATAAACTATAATCAGAATATCTCATCAATAACAG
Seq C2 exon
GTCGCTGGAGTAACCTCTACAAACTTCCCTACAACTGGATCGGAACCGGCCACGTGGTCTACAATGGAGCCTTCTACTACAACAGAGCCTTCACCAAAAACATCATCAAATATGACCTGCGCATGCGCTACGTGGCAGCTTGGACCCAGCTTCACGATGCCGTCTACGAGGATACGACGCCTTGGAAATGGCGAGGTCACTCAGACATCGATTTTGCTGTGGACGAGAGCGGACTCTGGGTGATTTACCCAGCGCTGGATTACGACTACTCTCAACACGAAGTCATCGTCATCAGCAAGCTGGACCCGAGTGACCTTTCCATAAAGAAGGAGACAACATGGAGGACTGGACTGAAGCGCAACTCCTACGGAAACTGCTTCATCGTGTGCGGCGTCCTGTATGCCATTGACGTCTACAATCAGAAAGAAGGCGAGGTTTTGTACGCCTACGATACGCACACGAACACCGAGGCCACACCGCGTTTGCCTTTCACAAATGAGTATGCATTTGTGACCCAAGTGGACTACAATCCCAAAGATAAAGTGCTGTATGCGTGGGACAATGGCCATCAGCTGACTTACAATATTCACTTTGTTGGCCAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005648:ENSDART00000084439:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219111=OLF=PU(21.3=85.7)
A:
NA
C2:
PF0219111=OLF=PD(78.3=98.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]