RnoINT0105287 @ rn6
Intron Retention
Gene
ENSRNOG00000014034 | Olfml2a
Description
olfactomedin-like 2A [Source:RGD Symbol;Acc:1311651]
Coordinates
chr3:23252927-23259321:+
Coord C1 exon
chr3:23252927-23253112
Coord A exon
chr3:23253113-23254919
Coord C2 exon
chr3:23254920-23259321
Length
1807 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
CTTCTACTTTCCACACGCAGGCC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTCGGGAGGACAGCTGTGAGGGCACGCTCCGAGCTGTGGATCCCCCTGTGAAGCATCACAGTTATGGGCGCCACGAGGGAGCCTGGATGAAGGACCCTGCAGCTCCAGATGACAGGATCTATGTCACCAACTACTACTACGGAAACAGCCTGGTGGAATTTCGAAACCTGGAAAATTTCAAACAAG
Seq A exon
GTCAGGGAAGCTGGGAGGGAGAGAGGGAAGGATGTGGGTGGTCTGGGGAGGGGCTCCTGTAAGACTCAGCCTTCCTGTGCATTTTCAATGTTCACCCTGCCCTAGTTCCAGATAGCCACCCCCGCCCCAAGGAAGGGTGTCTGGGGGCCCAGAGAATCCTGTTATCCACTGCTGTTAACTGAATACAGGGACAAAGGATATCACAGATGCCCTCCCTCGTGAGTGTGACTCGATATCAAGGAGAAGAGAGAGCTTCCACTTGCTGAGTGCTCTGTGCCAACTGCCTGTGTATGTCTGTCTGTCTTAGGGTTTCATTGCTGCAGTGAAACACCACGACCAAAGAAACTTAGGGAGGGGAGGTTTTACTCAACTTACACTTTCATATCACTGTTCAGCATCAGAGGAAGTCAGGACAAAATCCCCAGCAGGGCAGGGACCTGGAGCAGGAGCCAATGCAGAGACCATGGAGGAGTGCTGCTTACTGGCCTGCTTCACATGCCTTGCTCTGCCAGCCTGCTTGCTTGCTTTCTTTTTTCTTTCTCTCTTTCTCTCTTCCTCTTTCCTCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGCTTTCTTTTCTTTCTTTGTCTGTCTGCCTCTTTCTTTTTTTCTCTTTGTTTTGTTGTTGTTTGTTTTTTCGAGGCAGGGTTTCTTCGTGTAGTCTTGACTGTTCTGCAACTTGCTCTGCAAACCAGGCTGGCCCCAGACTCAGAGATGTGCCTGCCTTTGTGTCCCGAGTTGTGGGATGGAACAGGTGCTCCACCACCATCCAGCTGGTAACATCCTTTTTAAAACCGACTATGTCTGTGTCTGTAGCAGCTCACAGACTGGTGGATGTGACAAGTGTCAATACAAAGGATTAGGAGGAAGCTCTTCACTATATCCTCGGGTGGTCACATTGGCTAAGGATACTGAAAAAACAGGCATTCCCTTTGTAGACCAGATGGGGAATAGCAAACCTGACTCAAACCTGCAAAGTCTTCAAGGTGGAGCACGGGGCTGGCATCGCCCTCATCTCATTCCTAGGTGCCAGTGTCACAACTGGGGACCCACAGCCCGGGACTCACAGACACATGGATAATGTTAGTGCTTGACCCCATCTTTGTGAATTAGATGATGGACCTAGGTTCAGCCCCATGGTCAAGTTTTGGTGCAAAGTACTTGGGCACTGGTGAGCCCTTGGTGGTCTCTGGGGTGAGTGGGTGATGTTCTTTCTAGTGTGCTTCTGTTGCTGTGATAAGCACCATGACCTGAAGCAACTTGATTCAGAAAGGGGGGTTACTTCATGCTTCCAAGTAACAATCCATCACTGAGGGAAGACAGGACTGGGAAATCAAGGCAGGAACCCCTGAGGAACACTGCTTACTGACTTACTCTCTTATTTGTTCAGAAAACTCAGCTAGCTTCCTTATTTGTTTGCCTTTTTTTGTTTGTTTTTGTTTTTGAGACAAGGTCGCACTGTATAGCTCTATCTGTCTTGGAGCTCAGTCTGTAGATCAAACCAGCTTCAAACTCACAGAAGCCACCTGCGCCTGCCTCCCAAGTGTTAGGATTAAAGGCATAGATCACTATACCCAGCTAGCCCTCTTATACAGCCCTGGCCACCTGCCTAGGCATGGAGCCACCCCAGAGGGCTACCCCTCCATCATCAAGCAAAACAGTCTCTCCCAGATAGGGCCACAGCCTGGGCAGATCCTCTAGACTGTGACAAACTAACCAGAACAGGGTACCCTGGTATGACCTTCTACTTTCCACACGCAG
Seq C2 exon
GCCGGTGGAGTAATATGTACAAGCTGCCCTACAACTGGATAGGCACAGGCCACGTTGTGTACCAGGGTGCCTTCTACTACAACCGTGCCTTCACCAAGAATATCATCAAATATGACCTGCGCCAACGCTTTGTGGCCTCCTGGGCTCTGCTGCCCGATGTGGTCTATGAGGATACCACACCCTGGAAGTGGCGTGGCCACTCGGACATTGACTTTGCTGTGGATGAGAGTGGCCTGTGGGTCATCTACCCAGCCATGGATGAGCATGGCGAAACACAGCATGAGGTGATTGTGGTGAGCCGCTTGGACCCTGCAGACCTCTCTGTGCACCGGGAGACCACATGGAAGACGCGGCTGAGGAGGAACTCCTATGGGAACTGCTTTCTGGTGTGCGGCATCCTCTACACGGTGGACACTTACAACCAGCATGAAGGCCAAGTGGCCTATGCGTTCGATACCCACACCGGCACTGATGCTTACCCACAGTTGCCCTTCCTCAATGAATATTCCTATACCACCCAGGTTGACTACAACCCCAAGGAGCGGGTGCTCTATGCCTGGGACAATGGCCACCAGCTCACCTACACTCTCCACTTTGTCGTCTGAATGGGGACCCATGGTCACAAAGGAGGGCAGCAGAAGAGAAGGGGCTATCCTTAGCAACCCCTGCAATTGATATAAGTATCAGTTGGGGGTGTCCTGGGCTAGGTATTGGCTTTGATGGCTTTGAGTACTTTCTTAGTGCCCAGTAGGTGACACTTGCACAGCAATGCTGTGCTAGGAGCTTTTCCTGCGCTTACCCTTTTGACTCTTTCTACTTCTTCCCTTGAAGGCAGAGGTTCCTAAGCCCATTGAACAGATGAAGTGACTAAAGCCCAAAGGAGCAGCATTCCAGATGGGCAGGCTACGTCCTCACAGTAGCCACATTTGACAGATGAGAATCCCTCCTCCAGTCCCCTTCCAGGGCTCTGCAGAGCCTGAGGTCTTTGGGACCTATGCAGTGGTGTCCTGCAGCTCCAGGCCTCTCCTCTGACTGAATGCTGGTAACCTTGAGCTTAGAGCTTCTTGACCTATGGTCAGCCCCTGTGCTCTCTTGCTCTTCTGTCTAACCACATTCCAAAAGTTCATCATCACAGACACTAAGCAGTCACTGAAGCAAATGCTGGCCAGGTCCATGGCCCTTCCTCTGTAGCGACTTCTTGTCCCTATGTTCCTTGCACATTTTGCAGCAGATGGGAAGATATAGGCAGCTAAGCTCTGGCAGTGTTGGTGCTGGCCTGAGCTTCCCCCCATTTCAACTCCTCTACCAGAAGTCCTCGCCTTGGCCATCCACTAGGCCTCGGCTCCTTCCTTAGCCCTTCCCAAAGCCTTGGGCCAGGGGCCTTTTCTGGGCCTTGAAAGCTATTCTGTCCACACTCAGGGATTGCTAAGAGTAAGGCCTTTGTCCCCAGAGAGGGTGGCCACAAGATGGAACAGGTTCTGTTTCCCTTGTTGATCGAAGTCTGGTCATTTGGTGGGTTGATTCAGCAGCCTGGGAATCTGAGGGAGACAGGACAGCAGGGTTCAGAGGAGACTTCTCAGTTCGCAGGACAAAACCCGGAGGTAGAGGCAGGGGAGGGTAGACTGCGGTCTCAGCACCAGGATTTTCTTTGAGATGGGACTTGGGTTTGTGGACACACAACTGAACATATATAAGCTACCTTAAAATAGGATTGGCAGCTAGCTGTCCTGGTACGGCTTGTGGCCCTCAGAGCCTTCAGACCCAGATAGCCCTGAGAACAAGACCTTGCAAGCCAGCCTATGGCAGCTTTGGGCATTCTTTTTAAAGCTGGAGGGAAGTTCTTTTTCCCATCTTGTTTTACCAAAGAAAATATAGGTCCCAATGGTTCTAGGGTATGGACGGAGTCATACAGTGCGAGGTACAGCTGATCTCCTTTGGAAAAGCCCTATACTGAGACAGCTCTGCCTGCAAAAAACAACAGATCCCCAGTACCTTGAAGGTGTCTACTGCTGCCCCTGGACCCTGGACACTTCCTTGTGCCCTGTGCCCGCTCCTAGGATACCCGCAGTGAAATATGAACCAATTTATGAAATCCCGCTGTGCAGTACTCTGTAGAGCGATTCAGGTTCTGTGCAGCCTTGCTGTCTTCTGGACATTGTTGGGAGATGTTTTACTTAAGGAACAACTCCCTCCTGAAATAAAGAGGGACAGTGGTAGCCAGCCCAGCCAGGTCTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTGACCACCACAGGCTACTCCTCCAGCCTCTTCAGAGAACTTGGAGGCCCCGGCCTTCCCCTTGGCCCTGGGTGTGGGTCTTTTCAAGACTCTGTGTTTTGTGATGTCATAGTCCAACCATGTGAGAGGTGCTCAGGCAACAGCCTGAGTAGAGGGAACGCTAGGACACACTGGTTTTGAAAAGTAAACATGTGGCATAGTTTCCTGGGGTGGGACACAGGGCCTCAATTGTCCTCAAGTGTCCTCCAGGCCCCTTCAGGCCTTTGTGTGTTGTATGGTAAACACAGTTCATTTCCTCACTTGTAAACGGTCATACCGGATGCCAAGTAACTCACTTGTCACATAGGCTGGTAATGAAAGAACCAGGCTTCCAAATCAGGTAAGCTGTCACTGTCATCTGGAAACCATCAGTGTGCTGGACATACTGTGGAAAGTAAACTACAAAAGGCGCCATGGACAGGTGAGGACAATGACAGGAATTTACTCAGGATCACACAAGCAATGTGGTCTGGGGCAAGGCTAGGGGTTCAAGGCTCATCAGAGCATGTTTCCTGCTGTCAACAAATTCCAAAAGTTTGCTGGTAGTTGCAGTCAGTCAAGATGGCCTGGGCAAGAGCTCCCCAAAAGGCCCGGTTCTACAAAGCTTTGAACACCAAGCCAAGGAGGGCCACATCTAGCCTTGTCTAGGACACAACTGAGTCAATTAACAGAGCCAAGGAAATTCCAACAGTTTCTAATTAGATTTTGTCCTATTGGTAATGAGAAACATGCAAGGGATTTTGCTAAGGAGCCTGAATCTGCCAATCTGTGAACTCTAAAGGAGACCCCAGCTCCCACTACCACACACACAAACACACACACACTCACAGACACCTATGCACACTTACCACATACATGCCACACATATACACACTATGCACATCTTTACACACATACACTTCTCACATCCCACACGAACACATGTGTGCACTCACACATACCTTGGGTAGCATTTTTCTGGGGAATAGATACTTCATAGAAGGAGGGATCTGGACTGTACAGAACTGCCCCCGACCTTTCTATAAGGACAGAGCATCCTGCACCTCTGAACAGCTCTACAGGTGAATGGGCTTTGGCTTCCATCACTGATTCCTCTCTGGAGGTTGCCAGGCCTTGAGTGGTGCTGGGCACAACTCGGGACCCAGTAGAGAATCTTATTCTCCCTCCTGCATTGAAGATCCAGCACTGTGTGACTGTCAGAGTCCTAGGTGCAGGGGAATTGGGAGCCCGGGTTAGTTTCCAGTTGGCCTCCTTCTCAGGCTGAGTAGGGGTATTAACTCCCTCACAGAAGTGGGACTAAGGCTTAGTGAGAACACAAGACCTTAGGAGACCTCACAGCACTTCCCAGAACTGGAAGTCACTTTGACCTGCAGTCTATACTAACCCACCTTGGAATCCCCAATTGGCAGTGTCTTCTCTCATTATAGGTTATGAACCTCGAGTTCAGAGAAATTGAGCTATTCGGTCAGGGTCCGGTACCTGGCATATGGAGGTGAGATTCGAACTAGGTCTCTTTAAACCAAAGCCCCCAGCTAACTGTTGAAGTAGTCATGTTTTTGTTTTTGCTTTCGTGGTTTAGAACAATAGGAAGCTCAACGACAAGTTTGAGATTATTTTAAATGCTTATATGGAGTTTAACCAGCTTCATTCTAGCTCTTTGCATGTACCTTTACCCCGATTTATTTTTATTCTACTGTATTTTTTATACTGTATTTTTTTGTAAGGTGCCACAAGATCTTTTTGCAACAGGGTAGCATATACATAAATAAAACCCATGACTATAGCTGGATGTGGTGGCTCAGGCCTTTGGTCCATGTGCCTGGGAGGCAGGGGCAGACAGATTTCTGAATTCAAGGCCAGCCTGGTCTACAAATCAAGTTCCAGGACTCCCAGAGCTACACAGAGAAACTATCTCAAAAAGAAAAAGAAAAATGTACTGAAAGCTTTATTTAAACTCTTAAGCACTGTGGACTACAACCTTGGGTATAGCTCCATGTCAGAGCGCTTGCCTAGTGTGTATGAGGGCCTGAGTCTGGTTCCCAGCATCAAGCATCAATCAATAAATAAAGTGTTTCTGGGTCGGTATAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014034:ENSRNOT00000018853:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219111=OLF=PU(21.2=85.7)
A:
NA
C2:
PF0219111=OLF=PD(78.4=99.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCTCCAGATGACAGGAT
R:
ATGCTCATCCATGGCTGGGTA
Band lengths:
355-2162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]