GgaINT0124863 @ galGal4
Intron Retention
Gene
ENSGALG00000001048 | OLFML2A
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
Coordinates
chr17:9518486-9520359:+
Coord C1 exon
chr17:9518486-9518995
Coord A exon
chr17:9518996-9519111
Coord C2 exon
chr17:9519112-9520359
Length
116 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ACACCTCCCACCCCTCCCAGGCC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GACCCCACTGTGTGTCTGCACAGAGAGCCCTGCCAGGGTGGTGGCTGTGCCTGAGCGGCAGGAGGAGCGGGGCCTCGCGGACACCCCATCTCAGCCCGGCACACGTGCAGAGCCCCCGCTGCCCCACACCACAGCTGCACCCAGCACTGCCCCGGCCCCACGCACCGCCGCCCACAGCCCCCCTGGCACCGCCCTCGGGGATGGGGCTGTCAGCACTGGGGGCCCTGAAGCGCCCAACAGAGGTGGGTGAAGGCGGGCGGTGTGGGTGGCTCCGGACTATCTTGGGCAGCACTGAGCCTTCCTCCCCTCCTCCTCCCTCCGCAGTGAAGGAGATGGAGTGTGAAGGTACCATCCGTTCAGTGGACCCCCCCATGGAGCACCACAGCTATGGGCGCAATGAGGGGGCCTGGATGAAGGACCCAGCGGCCAAGGATGATCGCATCTATGTCACCAACTACTACTATGGCAACAGCCTGGTGGAGTTCAGGAGCCTGGAGAACTTCAAGCAGG
Seq A exon
GTGAGGGCTGGTGGCGGTGCGGGGCTCCCAGGCTCTCTGTGCCCCCTGGCACCAGGCACAGCTCCGTGCCTGGGCTGTGGTCACCAGGAGCTCAGAACACCTCCCACCCCTCCCAG
Seq C2 exon
GCCGCTGGAGCAACCTCTACAAGCTGCCCTACAACTGGATCGGCACCGGGCACGTGGTGTACCGCGGCGCCTTCTACTACAACCGCGCCTTCACCAAGAACATCATCAAGTACGACCTGAAGGAGCGCTACGTGGCAGGCTGGGCGCTGCTGCACGACGTGGTGTATGAGGACACGACACCCTGGAAGTGGAGGGGGCACTCAGACATCGACTTTGCAGTGGATGAGAGCGGGCTCTGGGTCATCTACCCCTCAGCAGATGATGACTACGCGCAGCAGGAGGTGATCGTGCTGAGCCGCCTGGACCCCGGGGACCTGTCGGTGCGCAGGGAGACCACCTGGAGGACCGGGCTGAAGCGCAATGCCTACGGGAACTGCTTCATCATCTGCGGCATCCTGTACGCCGTGGACACCTCCAGCCAGAAGGAGGGGCAGATCTCCTATGCCTTCGACACGCACACGGACACCGAGGCAGAGCTGCGGCTGCCCTTCCTCAATGAGTATGCCTTCACCACGCAGGTTGACTACAATCCCAAAGAGAAGGTGCTCTACGCCTGGGACAATGGCCACCAAATGACATACCGGCTGCACTTTGTGGTCTGAGTGCTGGCCGGGGCCACGGGGACAGCCCAGCTCCCCAGGAGCCCCCTCCACCCAAAGCCCCACACTGTCTGCATCCTGGGGATGGGGTGGGGGAGCCCCTGGGTGAAGGGACACCCCCACGACGTGGTGGCTGCTGGGGCTGCAGAGCTGCGTCCCACCTCTGGCAGCTCTGGAAGCCCCGGGGCCGGGCGAGGAGCTCAGCCCTGTGTGTCCCCACACTGGGCGCCCACCCAGCACCGAGCAGCTGCACCCAGCCTGGCCCCTCTCCTGCTGCAGCCCTGGGTGCTCTTGGCCCACCCAGGACCATGTCCTGCAGGGCGGGTGCAGCTTGGGTGCTGCCTCACTGGGAGGAACAGCCACCGATTGCTATTTTAGAAGATGCAATTAAGATGCCTTTGCTTTTGCAGCTCATTAGCTTGTTATTTAAATGCATTCACAGGAGCTGTGCGCTGGCACAGAGCATTGCTGGTGTGACGCTCTGCCCTGCCTGAACCCAGCGCCCAGCACCAGGCTGGGATGGGCACGTGGCCATGGAGCTGCGGCCTTCGTGCTCCTCCCCAGGCAGGGCAAGGGGCCTGGATTGCTTGGCTTGGTTTCTGTCAGTTTAGAAGTGAACAGTATTAAAAAGTAACAGATATAAAGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001048:ENSGALT00000001570:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219111=OLF=PU(21.3=31.6)
A:
NA
C2:
PF0219111=OLF=PD(78.3=99.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCTTGGGCAGCACTGAGC
R:
CTTGTAGAGGTTGCTCCAGCG
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]