HsaINT0118182 @ hg19
Intron Retention
Gene
ENSG00000185585 | OLFML2A
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:27270]
Coordinates
chr9:127570060-127577159:+
Coord C1 exon
chr9:127570060-127570245
Coord A exon
chr9:127570246-127572086
Coord C2 exon
chr9:127572087-127577159
Length
1841 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
ACCATCGCCCTCGCCTGCAGGCC
3' ss Score
10.14
Exon sequences
Seq C1 exon
GCAGAGAGGCGAGCTGTGAGGGCACCCTCCGGGCTGTGGACCCCCCTGTGAGGCACCACAGCTATGGGCGCCACGAGGGAGCCTGGATGAAGGACCCTGCAGCTCGAGACGACAGGATCTATGTCACCAACTACTACTATGGAAACAGCCTGGTGGAGTTCCGCAACCTGGAAAACTTCAAGCAAG
Seq A exon
GTCAGGGACCCCCGGAGGTGGAGAGGGGGCTGGGTATGGACAACCTGGGGAGGGGTCCTCATGGGGACTTGGCCTTCCTTGCCTTGTGGGTTTCTATGGTATAGGCTGGTTGAGCTCCAGATTGTTAGCCACCCCAAGGAGGGGGTTCTGGGCTGAGGGCACTGGGCTGGAGGCCCAGACAGACCCCATGGCACCCCGGTGTGCTAGCACCCTGCCAGGAACCAGAATGCAGCGGCAAACAAGAGAGACATGGTCCTGCCCTCACAAGTGTGACTTACCATCAAGGGGCCAATACTGAGTTTCCATTTGTTGAACGCTTACCCTGTGCTGATCTCGCCCCCCGTGTATCAGCTCTTGGTAGCTACATACCTCCAGGAGGTGGGGTTATCACCTGTTTTATAGGTGCGCAGTGTCTCAGGTCTTAGCGGAGCTGCAGGTCTGGGCAGGGGCCAGGATGGAGCTGACGGCACAGGGAAGGGCAGAATTCTGCTTATCAAACCTGGGGAATGATGCCAGGAAGGGGTCATTTAGATCTAGCCTGCCCTTCAGAAATGCACAGTCTGGTGGGGGAGGCAAAGGCTTAAAGAGACGATTTCAGTACAGCATTAGAGGGAGCACTGAAGGGGCTATGGGAACCCAGCCTAGAGATCAGGGAAGACCTTCCCAGGAAGGTGATGCTGAGCTGGGCCCTGGAAGAAGAGTAGGAGTAAGCCATGCGGAAGGGAGAGGGAAGGGTGTTCCAGGCAGAAGGCTGAGTACATGCAGAGGCCTGGCAATGAGAGGAAACGTGATGGCCTGGGGTAGGGGGGATGGTGACTGAGTAAGCTGGGGCAGGCCTGGTGAGCCAGATAAAGGAGTTTGGACTTAACCCCGAGAGCCATGGAGTCACAACTAAAGGCCTGGAACAGGCCGGGCGTGGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCTGAGGTGGGCTGATCACTTCAAGTCAGGAGTTCAAAACCAGCCTGGCCAACACGGTGAAACCCCGTCTCTACTAAAAAATTAAAAAAAAAAAAAAAATTAGCTGGGTGTGGTGGCAGGCGCCTGTAATCCCAGCTACTTGGGAGGCTAAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGATGACAGAGAGAGACTCTATCTCGAAAAATATGAAAAAAATAAAGGCCTGGAACAACTGAAATCCTTCCTCCGCTAGCTCAAAATTGGCCGGCTTTCTGCTCAAGCAGCGCACAGGGTGGTGGAGGAAGCCAGTGATAAGTATCAAGATGAAGGCTTCTGTCTGGCTGCTACAGACGTGTCCTGGGGGGATAAAAGACAAAGGGTTATGGGAGGCTGGAGGAGAGGCCCCTCACTCAGGCTAGGGAGGTCAGTGAAGGTTTCCTAGAGGAGGTGACATTGGCCTGGGGCTCTGAAAGATGGGCAGGCATTCCCCAAGCAGATGGCCTGGGGAATGGCAGTCCTAACAGAGGAACAGCAGGGACGAAGGCCTGGAGACAAAGAATGGGGCTGATGTCACCCTGTGTCTAAATCCTAGCTGTGCCATTCCAGAGCTGGGCGACCTTGATCCTCTGAGCCTTTTTTTTTTTAAGCAGATGGGATGACGATAGACCTCCTTCAGGAGACGCTTGTGCCATAATAAGATGTCATCCCAGCTCCAGGCACACTGCACATGCTTGGTATCAGTCACTTACTGGGCCACTGAGAGCCCTTGGTGGGCTCAGGGGATGTGGGTGGGCTGGGGTTGCTCGGGAGGTCTGGGGTGACCATCGCCCTCGCCTGCAG
Seq C2 exon
GCCGCTGGAGTAACATGTACAAGCTACCCTACAACTGGATCGGCACAGGCCACGTGGTGTACCAGGGCGCCTTCTACTACAACCGCGCCTTCACCAAGAACATCATCAAGTACGACCTACGGCAGCGCTTCGTGGCCTCCTGGGCGCTGCTGCCCGACGTGGTATATGAGGACACCACACCTTGGAAGTGGCGCGGACACTCGGACATTGACTTTGCCGTGGACGAGAGCGGCCTGTGGGTCATCTACCCCGCCGTGGACGACCGCGATGAGGCCCAGCCCGAGGTGATCGTCCTGAGTCGCTTGGACCCCGGCGATCTCTCCGTGCACCGGGAGACCACGTGGAAGACACGGCTGCGGCGGAACTCCTACGGGAACTGCTTCCTGGTGTGCGGCATCCTGTATGCCGTGGACACGTACAACCAGCAGGAAGGCCAGGTCGCCTACGCTTTCGACACGCACACGGGCACCGACGCACGCCCCCAGCTGCCGTTCCTCAACGAGCACGCCTACACCACCCAGATCGACTACAACCCCAAGGAGCGGGTGCTGTACGCCTGGGACAATGGCCACCAGCTCACCTACACCCTCCACTTCGTGGTCTGAGTGGAGACCTGTGCTCCCCGGAGAGGGGCAGCAGTGCGGGAGGGGCTTTGCACAGCAGCTCCTGCAACTGACCCAGTCCGCAAATATTTATTGGGGGCCAGCCCAGGGCTGGGACTGGGCATGAGGTGGTCACCAGGATTGAGCTTCCTCAGCACCCAGTGGGTAATACTTGCTTCCACTTGCAGAGCACCGTGCCAAGCACTTCCCACACACTTACCCGTTTGATTCTCCTAGCACCTCCCTTGGAGGTAGAGATCATGAACCCATTTAACAGACGAGGAGACAGGCTCAGAGAGGCACCGTCCCTTGCCTAACACCTCAGTTGTGATCAGGCAGGCTGTGCTCTCAGGACAGCCCCATTTTAGGGATGAGGAGACTTCACCACGCCCTCCCCTCCCTGCCCTCCCCCATCTCCCCGGTCTCCCTTGTTCTCTCAACCCAGTCTCCCTTCCCAGGGCCACTCAGAACCAGAGGTCTTTAGGGCCAGTGTACTGGTGTGGGGTGGAGGCCCTGGCTCTGCCTGCCATCCTAGGGCCCTGTTCTGGCTGAGCTGTTGGTGGCCCTGGGCTTTGGGCCCCTTAGCCAATGTCCTTGTCTCTTGTCTTTGGCCAGCCCCCTCAGCCCAGCCCACCCCACCCGCTGTCCGGCCACATTCCAAACCTCTACCGTCACCTAGCTGCTGAGCAGAAACCGCACCCCGAGAGAAAATCCCATCCTCTGTTCCAAGGCCCCTGTCTGCTCTATGCTCATTTTTATTTTCTCTTATTCTTCATCAGTGCCGTCATTTGTTTCTGCAGCAGCAGCTGAGAAGGCAGCCGGCAGCTCTGCCAGGGTGGGGAGCTGAGCTGAGGCTCCCTCTCCACCCAGAAGCACTGGCGTTGTTCACATAGTCAGGCCTTGGGTCCCCTCCCTGGTTCATCCCAGAGCCTTTGGGCCTGGAGTCCGCCTTGTCCTTTTTCTCTGGGCTTTCAAACCCACAACCTTTACACACTCAGGGATACCTCCGGGTCTGCCATGAATAAGACCCTAGGCCCAAGTCTGGTGTGGTGCCAGGATGGCACAGTTTCCCTCTTCCTTGCCAGCCCTGACCTGGTCACTGGGCAGGCTGGCCCAGCAGCCTGGGGGCTGCAGAAGACATGGTGTGAGTAGTTGGGTCCAGGGGAGGCATCAGGCCTTCTTCTGGTTGCAGGAGAGAACCAGAGGGTGGGAACGGGGAGGGAAGAACTGAGGGTCTGCAGACTGGACTTTTCCTGGCTCGACCCAGGACTTGGGTTGAGGATGCACGGGGGCCACCTTGCCCGGGGCCACTGGTGGCTCCCCAGAGCCTCAGACCCACACAGCCCAGAGGACGAGGCCTTCAAGCCTGCCCCTCTTCTGCTTTTTTAGACAGTATTTTTAGAGCTGGAAAGAAATTTTCTAGCCCAACTCCCTGTTTCATGAAAGAGAAAAGAGGCTCAGAAAAGTTTAGAGAGCAGCTCAGTGTCACACTGGGAGCTGGGCACAGCCGATCTCCTTCCAGAAGGGTTCTGTCTGTATCCTTTATTCTCCGCACATGGAGGCTGCCCTACCTGGGAAGGCACCCCAGCACCTGTGAAGGACATTTACTGCTCATCCTCACCTGCCCCCTGGCCCTTGCTGCCTTCATTCTGTCCCAATGCCAGCTCCCTGGATGTCTGTATGTTTGAATACCAGTTGCCATGTTAGGAAGGTCAGCTGCACAGCCAAGAGTGTAAGAGTGTAAAGAAATGCCTTTTTTTTTTTTTTTGAGTTGGAGTTTTGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCCCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGCACCCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGGTTTCACCACGTTGGCCAGGCTGGTCTCGAACTCCTGACCTTAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACTGCGCCTGGCCAGCAAATGCTTTTTGTGCAGAATACACTTCTTTCAGGCATTGTCAGGTGCTGTTTTGTTTAAGCTCTAACTCACCCCTGGAATACAGGGGAATGATGACAACCAGCCCAGCCAGGCCTGACTCATCATGGTCACATCCAGCCCCCACCCCCGGCCAACTAACCACTGCAGGCTCCTCTTCCAGACTCACCAGGGGGCCTCGAGGCCCCGGCATCTCCCTTGGCCCTGGGTGTGGGTTTTACAAGACTGTGTCTTTCATGACATCATAGCCCAACCATGTGAGAAGAAGGAGAAGGCCCCCCTTTCTTCATTAATCTGAAAAAAAGGAAAGTGAGAATAGGCTGATTTTTAAAAGTTAAGGGGCAAGCAGCATTGCATTCTGGGGGAACGATCCTGGCCACAGCCGCCAAACAAACATTCACTAGGCCTCTTCTGTTTTCATACCCTTGTAAGTGGGTTATGTGGTGGGTATGGTCAGTTTTTTCTTTTTTCTTTTCTTTTCTTTTTTTTGAGACAGAGTTTCGCTTTTGTTGCCCGGGCTGGAATGCAATGGCGCGATTCAGCTCACTGCAATCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTTAGCCTCCTGAAAAGCTGGGATTACAGGGCCCTGCCACCAAGCCCAGCTAATTGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGGCCAGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAGACTGTTGGGATTACAGGCATGAGCCACCACGCCTGGCCAGTTTCTTCATTTTACATATGGTCACATTGGCGCCTAGAACAGTTAGGTCGCTCGTCACATAGGCAGTTAAGTGGAGAACCAGGTTTCAAAATCAGGTAAGAAAACCATCATCATTAACTGAGCACCAGCTGTGCTAAGCCTGCCACGGGCGTATCCTTGCAGCCTCACAACAGTGGGAGGTCTGTATCCTGAATGTCCTCATTTTACAGATGAGGACATTGAGGAGAAGAGACTTACCCAGGCTCACACAGCAGCTCAGCCTGTTCCAGGCGCTGGTCAGTGCGTGTTCTTTGCCACCAGCCTGTCACTCCAGTGGCAGCTCCAGAAACGGAGGCTGTTGCTTTTATCCCTAAACTGCATCCACAGAGAAGCCCCAAGAAGGAGGTTGGGGCCAGCTCATAAAAAGCCTGAATGCCAAGCCAAGGAGTGGATGCCTCCAGTCATATTTAGAACAAAGTCAAGTATAAATTTACAGAGAAAAAATTCTAAGACAGTTGGATGTTGTCCTGTTGGTGAGGAAGGGAAAGGTTTTTCTTGTAGGGAACTGGAACCAGCCCACAACTGCACACTTGTGAGCTGTCATGGAAACCTGATCCCCAACAGCTTTTGAGGTTGTTTGTTTGTTTGTTTGTTTACCTGTCTTGGGCTTTGTTGCTTTTGGCAAAAGGTACTTCAAACAAGGGAGGGCCTGGACTGAGGGGGACCAGGTCTTCTTGCTGACCTCGTCTACAAAGGCAAAGGAAGGCAAAGGAAGCTGTCTCGGGTGTTTCTGAACAACGTGACTCATGAGGGGCTTTGGCTACCTCTTGCGTTCCCCCTAGAGATGTCCAGGCCTTACATTTAATCGGCTTTCTCTGCGGTGGGGTAGAGAATGGAGCTCCCGCCTTGCGGGCAGTGCTAAAGGTGGAGCTGGGGGATTTTCCTGGGAATGATTTGAGGGCTCTTGAAAGCCCATGTGTTCCAAAGCGTCTTTAACTCTGGGATAGCATTGGAAGCCGCTGTCATGACAGGACATGGCACTGGATGGCTGGCAGAGAGCCCTGGCTGGGAGTTAGGGAGCCCTGGGTTGGAATCCAGCCCCACCTCTTTTATGCCACAGGTTTGGTCAAGTTCTCTCCCGCTCAGGGTAGGGCTGTGAACTCCCTCTTACAGCTAAGAACATGCAGCTTAGTGAGGACAAGACCCTTCTAGAGCTTTACCCCTAATCCCCCCCCAGGAGCCCCGAGGCCGGCATTATTCCTCCCCATTACAGGTGATGAGCCTCAAATTCAGAGAGCTTAAGCAACCTGCTCAGGGTCACGTCTCCAACAGGCAGTAGAGTCAAGGTATAAACCAGGTCTGTTTTTGTACCAGAGTCCCAGACTAACTGTTGGTAGGAATCTTGTAACCAGTCATGTTTTCTTCCTTGTTTTGGCCGCTGGGAAGCTCAAAGTCAAATTCGAGACCCTTTTTTTTCCAATTGTGCTGAGTCTCCTACTAGACTCGCTTCATTCTAGCTTTCTGCTTTTACCTTTACCCTAATCTTTTTATTTTTATGCTATTGTACTTTATTTTTGTAAGTTGCTGAGATATCTGTTTTGCAACAAGATGGGCTATATCTAAATAAAGACATGATCAAAGGTTTGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185585-OLFML2A:NM_182487:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0219111=OLF=PU(21.2=85.7)
A:
NA
C2:
PF0219111=OLF=PD(78.4=99.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGCCTGGTGGAGTTCC
R:
CAAGCGACTCAGGACGATCAC
Band lengths:
350-2191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)