MmuINT0119745 @ mm9
Intron Retention
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139807886-139808903:+
Coord C1 exon
chr6:139807886-139808022
Coord A exon
chr6:139808023-139808733
Coord C2 exon
chr6:139808734-139808903
Length
711 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CATTGTTTTTCAACTGACAGGCC
3' ss Score
7.09
Exon sequences
Seq C1 exon
GATTCATAGAGATGGTGCCTGATGCTGTAACCCTGGCCAAGATCCATCTGCACTCTGGGCTGATCGGACCCCTGAAAGAAAACACCATCAAGAAGTGGTTCAGTCAGCACAACCACTTAAAGGAAGATTATGAGAAG
Seq A exon
GTTTGTTCTTCTGGAACTAATTTTAAGCAATAGAGTTAAATAAGAATGTGCTCCGGTCCGTTGAATATTGTGATTTATGGGAAAATAAATCAAATCCACCTTGAGTTCTAATTCCCTCATTCATCAGCCATGTGAGAATGACTCGCCTTACCTGGTGTATTAACTTGATGAACATCTCTACATGTTCTTTTCCTTCGGGAGAAGTTGTTGGCTATGAACAAAGGAATTTCATCACTCAGAGATCCCTCTCACAGAAACCACACGCCAGAGACAAGGCCTTCTGAAACCGACTCCTTCCAGTAGGCCCTTCCTATTTTCACACAATCTTCAAGTTTTGTAAATAAGTCTCTGTGTTAAAAATTCTCCTGTTATGCTCTGACTTTTCCTCTACCATTGACAAATGGCTTTTAGAATGTAAGATAGATGATAGAAATTGATAAGATGATGAAGGTGATGATAGATAGTTGATAGATTAGATCACTGATAGAAAGTACATATGGATATATATATCCATATATATATCCATATGTGTGTGTGTGTATATATATAAACACACACATGGATTGATAGGTAGTAGAAATAAAGATCTGTAATAGATAGGTAGATGGATAGTCAGATAATATAAATGTAATAGAAATAGATGGTCAATAATTATAGATGCTTTTTTCTCTTTACTATTGTCATGTTCTGTCATTGTTTTTCAACTGACAG
Seq C2 exon
GCCTTGAGGAACTTCTTTTACTCTTGTGCTGGCTGGTGTGTGGTGACATTCATCTTGGGAGTCTGTGACCGACATAATGACAATATCATGCTGACAAAGTCAGGTCACATGTTTCATATTGACTTTGGAAAATTCTTGGGTCATGCGCAAACATTTGGCGGTATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228-Pik3c2g:NM_011084:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(20.8=100),PF135751=DUF4135=PU(14.4=32.6)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(25.9=100),PF135751=DUF4135=FE(53.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATAGAGATGGTGCCTGATGC
R:
TTGATACCGCCAAATGTTTGCG
Band lengths:
302-1013
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: