HsaINT0124991 @ hg38
Intron Retention
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18503281-18505461:+
Coord C1 exon
chr12:18503281-18503417
Coord A exon
chr12:18503418-18505291
Coord C2 exon
chr12:18505292-18505461
Length
1874 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
ATTGTTTTTCAATGAATTAGGCC
3' ss Score
4.8
Exon sequences
Seq C1 exon
GATTGGTGCAGATGGTACCTGATGCTGTGACCCTAGCAAAGATTCATCGCCATTCTGGACTGATAGGACCATTGAAAGAAAATACAATTAAAAAGTGGTTCAGTCAGCACAACCACTTAAAGGCAGATTATGAAAAG
Seq A exon
GTTTGTCCTGTTGCAGATCATTTTAAATAATGTACTTAAATAAGAATATGCTCTGGTTCATTAGATATTCTGATTTGTAGAAAAGTAAATTAAGTGCACTTTGAGTTCTAATTCAATCAGCCCAGTAATTAATTAATCAGCCCAGTTTAAATGATATATTAACTACATAAAAGTTTCTGCATTTTATTTAGTTTCTGGGTGAAATTCCTGGTTATCAATAAAGATTTTTTTTTGCTCAGCTGCCATCCTGACATCAATCTTACACCAGAAACAATAACCCTTGAAATTACCTCATTTAAGTAATCTACAACTTCTATAAATATCCCTTCTTTTCTTTGCAATACATTTCTTCTGCCATTCCCCACTTTTTCGTCTCCCATTTTCTTAATGGTTTGCAAAATGCAAAACAGAGTTTATGTATGTCATAATTTTACCAAATGTACTGTTTTATTTGACTGCAAACACTTTTTCTCAATGTTTACTTCATTCTGGTATCTGGCTTGCAGTGTACAGTTGTGCAGGTTCTGCCCTGTATTAGGGATCTTGGCTAAGGAGATGAGTGTGGCTAGAACCAGTCCTTGGTCCACTTGCCAAGCTATGATCTAGTACAGCTGGGTCCACCCAGAGGAAGGAGCACCTAAATGCTAATTCATGCAAAAAATGCACCATTAGATTTGCTTGGTACTATCCTGTGCACTGAAATCCCCTTATTTTGAGAAATTCCTCAAACCTGGGTAAACTGGGATGATTGGTCACCCTACCTATGATAAAAAGGCCATGATAAAATAGACCCCAGAGTTCATCTATTCCACACTTCCATAACATTGTGTTGGAGCAAAATACAAGCTTTACAGGCCAAATAATAAATAATTAGATAAAATTACCTTGAAGTCTACTTTTTAGCTGTTCCCAAAATTATAACTTCAGTTTTGCATTAATCCTTGTGGTTACGTTATTTCCAAATACATCGCTCTTCACAACCACCATTTGAAGGATATGTTTTATTATTTTCACTTTCTAAGTGAAGAACATTTGGATTGACAAATTAAGTGACTTGCTTAGGCATGTAGGAAACCTAGAACTAAGGCACCCTAGCATGTAGCCTGGTGACCTAGCCTTCACTACATCAAGGCAGCCCCTCCATGCTAGGAGACCCATAACCTTATCCCAACCAGTCATTCCTGGTTACACCACCAAGTTGATGAAATGATGTATACCCAGGAGATCATTTTGGACGCAAAGTGTATTTTTGGAAAGAAACATCTGCTCATTAGAGAAACATAAACACAAATTGACTTAATGATAATCTGCTTCCACCCACACAGGCATTCACTGATATATATGTACTATACCAAACAGCTTCAGACATCAACTACATTGATGACCTATTTGTAAAAATACACATAAAATGTTACAGATTTCTCAGTATAGCTTTCTCTGTATTCCAAAATTTCAAATATTCAACCATTGATATTTTAAAATTCCTCTGGGAATAGGCAATATTGGGGCGTATTGTTCCTCCTTTTACTTTGAAAAAAAATCATTCAATATTGTATATTTGAGGTATCAAAAAATGACACTAGGAAACCTCTCTAGTGAACCAATGAAAATTAGCTCCATCTGAATGAAAGAAATATTTTCCGCAGTTTCAGTGAAAACATTCATCTATTAGGCTAAAGAACAGTTGTTTCATATTCTTCTGTAGCAGATCAAGAATCAGCTGCTTAACTGTACCCTCCTGTCCACTGAGATGTAGAAATTTTTCCTGATTATGTAATTTTGCTTATCATTTACTTTTTATGATTACCTCTGATGCTAATGCATTTGCTCATTTTTTGTTGTTATTTTTGCATGATTGTTTTTCAATGAATTAG
Seq C2 exon
GCCTTGAGGAACTTTTTCTACTCCTGTGCTGGCTGGTGTGTGGTAACATTCATCCTGGGAGTATGTGACCGTCACAATGATAATATCATGCTGACAAAGTCGGGCCACATGTTTCATATTGACTTTGGAAAATTCTTAGGTCATGCACAAACATTTGGAGGGATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144:ENST00000433979:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGATGGTACCTGATGCT
R:
CTTTTTATCCCTCCAAATGTTTGTGC
Band lengths:
302-2176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development