RnoINT0111309 @ rn6
Intron Retention
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173992724-173993777:+
Coord C1 exon
chr4:173992724-173992860
Coord A exon
chr4:173992861-173993607
Coord C2 exon
chr4:173993608-173993777
Length
747 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CACTGTTTTTCAACTGACAGGCC
3' ss Score
6.98
Exon sequences
Seq C1 exon
GATTCATAGAGATGGTGCCTGATGCTGTAACGCTTGCTAAGATCCATCTGCACTCTGGGCTGATAGGACCCCTGAAAGAAAACACCATCAAGAAGTGGTTCAGTCAGCACAACCACTTAAAGGAAGATTATGAAAAG
Seq A exon
GTTTGTTCTTCTGGAACTAATTTTAAGTAATATAGTTAAATAAGAATATGCTCTGGTCCGTTGGATATTGTGATTTATGGGAAAGTAAATTAAATCCACCTTAAGTTCTAATTCCCTCATTCATCAGCCACGTGAGAATGACTTGCTTTAACTGGCATATTAACTAGATGAAAATCTCTACATGTTCTTTTCCTTCGGGTGAAGCTGTTAGCTATTAACAAAAAACTTCTTCACTCACATATCCCTCTCATAGAAACCACAATCCAGAGACGAGGCCTTCTGAAACTGACTCCTTACAGTAGATTCTTCCTTTTTGTACGCAATATTCAAGTTTTATAAATAAACCTCTTTGCTAAAGTTTCTTCTGTTTTGTACCCTGACTTTTCCTCTACTGTTGCTAAATGACTTATAGAATGTAAGAGAAATAGATAATAGAAATTGACAGGATGGTGAAGATTATAGATAGATGGATGGATAGCTAGCTAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAGATTAGGTCACTGGTAGAGAGTACATATGTGTACACACACATACACACAAATAAATAGGTGGATAGGTAGTAGAAATAAAGATCTGTAATAGATAGGTAGATGGATAGACAGATAATATAAAAGTAATAGAATACATAGTCGATAATTACAGATGCTTTTTTTCCTCTTTACTATTGTCATGTTGTGTCACTGTTTTTCAACTGACAG
Seq C2 exon
GCCTTGAGGAACTTTTTTTACTCTTGTGCTGGCTGGTGTGTGGTGACATTCATCTTGGGAGTCTGTGACCGACATAATGACAATATCATGCTGACAAAGTCAGGCCACATGTTTCATATTGACTTTGGAAAATTCTTGGGTCACGCACAAACATTTGGCGGTATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228:ENSRNOT00000041499:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATAGAGATGGTGCCTGATGC
R:
TTTTATACCGCCAAATGTTTGTGC
Band lengths:
302-1049
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]