GgaINT0109732 @ galGal3
Intron Retention
Gene
ENSGALG00000013117 | PIK3C2G
Description
NA
Coordinates
chr1:66261836-66264439:+
Coord C1 exon
chr1:66261836-66261972
Coord A exon
chr1:66261973-66264269
Coord C2 exon
chr1:66264270-66264439
Length
2297 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
GCTTTTGTTTAATTAACTAGGCA
3' ss Score
5.77
Exon sequences
Seq C1 exon
GACTTGTACAGATGGTGCCAGATGCTACCACACTAGCCAAGATCCACAGGGAATCCGGACTGATAGGACCATTGAAAGAAAACACAATTAGAAAATGGTTCCGTCATCACCATCGTCTGGAATCCAGTTACCAAGAG
Seq A exon
GTAACATCATAATGAACCTTATTATATATTTCATCCTATGTCATGCAAAACAAGAAAGTGAATGACAGTATGCAGCAAAAACAGATGACTCACACACGAGGCAAACAAGTAACAGGCATAGAAGCCAGGGAGTTGATTTAAATTGCTGTTCTCTTTCCAAAGAGATATTGCTCTGGATCAGCTGCTTTGTAATGCTTTGCTTATAAAAACACATCATAGAGATGTTTTGAAATAGAAACAGTAAAGTGAAGAGAATCTGAAGTACTAAATTTTGAGCTCCAAAATATTTTTTTTAGGTTCAGCTCTTGAAATACTTGATTTTACATAAGCAGTGTAAAATCTTAGTGGGTTTTCTATATTTGAGACTAGCCATGGCAATAACAGAGTTTTGTAAGGCTGTGTAATAGAAACTGCCTAGTTGTATGATACATAAGATAAAGCTTTTCACTTCACATTGTGGGATCCCATGTAATGCATCTGCTTACATGAAACCAAGAATTATGAATGCACCAAGAAGCCAGTTTTACTTATAAAAGCAGAGATTTCCTCTTGAAAGGAAATTCTATTTATTCTCTGTTGGTTGAGCATATTCTAAGGCCCATTAAAAAAGTATTTACTATTTGTGTTGCTGGGACAATTTTTGATTCCTTCCTCATGCCAGCAGTAGATTAGCAGCCAACATTTTAATCTTTAGTGTTTTATAGTTATTTCAATAGGTTTTTGTTCATCCATATTTTCAATAAGAACATTCAAATTCCTAGTATATTAGGTAGATTCAATTGAACAAGATCAATCCATTCAGAAATTAAAAAAAAAAAAAAAAGTTTATATGTTTACAGCATCATGGTAGATGTGCAGCCAACATTTTGATTGAAAAGTTAGTTAGCTGTTAGTTATTGACTGAAAACCTGTTTTCTTACTGCTGCTACTCTATGTAAAATAGTACCATTAATGTGAAATTTTATAAAACCAATTTCTACCCATTTTCATTTGATTTTTTTAAACATATAAAATGCAGTCCACTCTGCATAGGGCATGCACAAAATTGCTGCTATATATTCACCTTGCACTTGCTGGTGAATTAACCTTTCTCTTTTACTTAGTAATTTTTTACTCATACAATGCTGTATTTAGGGTGCTCAAAAAGCTTATGCAGAATAAGCTTTAATATCCTCATTTTATGGTTGAGTGAACAGAATCTCAAGAAGCTTAGGTGTTTTATCCAAGGTCATCTGAGTGAGTAAGTAGTACAGTTAGACATAAAATTTACCAGAGTCTTGTGCTGTGGCCTAAGTCTTCCACAGTGTTGTCATCCACCATATCAGCCATTGCAGATGTCACCTGAATAATGATTTACCTTGCCTCATGTAGGTTTTGTCCAAAAATGTGCTGATCACAAGTAAGGATTTTTTGGGTTTCTATGTAAATGGATCTCGTTGTGATTGATACCAATGAGAGATTAAGACTTTTGAATAAGAATTGCATTTACAGCTCTTAAACTGGTTTTGATAAGATTAAAAAAAAAAAAAAAAGATGAGAACTATTCCGTTTGCTTTCTTGATTTTAATCAGAAATAGCTCTCCCCAAAAAGAGGATGCTAAATGTGGAGTAGGTTATTTCAAACAGGAAAGGTAGACCGGTTTGCAGTTTAATCATTCTTTTGGTTTTCTCTACATGACACTTGGTTTGATCTCATAGTCTATTTGGATTTGTAGATGCTATGCACAGAAAATGATTTAGCCTTTGTTATTTCTGTTCATTTCTGTAAAATGGAGTTGAATGATTTGGGCTGGGATAGTGTGAGGCTTGATTCATTGTAATTTAATGCAGTTGAAATGTGGAGAGAAAAGACCTATGTAGGTACAGAACAATTGTGTAAAATGACCCACTTCTTTACAGCACAATTTGTAAAATTAATAGATTTCCATCTTACTTCTAAACAATTTCTTTTACAATAGAGATGCAGGCTACTGCACAGAAAATCTAAACTTCCTGACATCTATCTTGTTTTTCTTAGGTACCTTTCACCTTGTAAGTTTTCCACAGAAATCCGAGAATCTATAAACCACAAGTTGAAAACTTCATGCATAAAATTGTTGTTGCATTGTAACTTTGAAATTTCTGTGCTGATTGTTCTTTAACCTATCCTAAGAACACTCAAGTTAAAATTTTAGCAACATTTGTAGAACCACATTTATTTGCTTTTAGCATTGAAAAAAAAAAAAAAGAAAAAAAGAAAAAAGAAAAAAAGAAAGTGTCTCTGTATTTCTAATAAATGCTTTTGTTTAATTAACTAG
Seq C2 exon
GCAATAAGGAATTTCTTTCATTCCTGTGCTGGCTGGTGTGTTGTCACCTTCATTTTAGGAGTTTGTGACCGACACAATGACAATATAATGTTGACGAATTCTGGACACATGTTTCACATTGATTTTGGAAGATTTTTAGGTCACGCACAGACATTTGGAAGTATAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117:ENSGALT00000021411:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]