BtaINT0111715 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92006884-92009929:-
Coord C1 exon
chr5:92009793-92009929
Coord A exon
chr5:92007054-92009792
Coord C2 exon
chr5:92006884-92007053
Length
2739 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
ACTGTTTTTCAACTGATTAGGTC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GGTTGGTGCAGATGGTGCCTGATGCTGTAACCCTAGCAAAAATCCATCGCTGTTTTGGACCGATAGGACCCCTGAAAGAAAATACAATCAAAAAATGGTTCAGTCAGCATAACCCTTTAAAGGCGGATTATGAAAAG
Seq A exon
GTTTGTCCTTCTGTAGCTAATTTTAAATGATGTACTTAAATAAGGATATACACTGGCTCATTAGATATTCTGATTTTTTTTTCTTTCAGAGCACTTTATTTATTTTATTTTTTAACTTTACAATATTGTATTGGTTTTGCCATATATCAAAATGAATCCGCCACAGGTATACATGTGTTCCCCATTCTGAACCCTCCTCCTTCCTCTCTCCCCATACCATCCCTCTGGGTCATCCCAGTGCACCATCCCCAAGCATCCAGTATCGTGCATCGAACCTGGACTGGTGACTCGTTTCATATATAATAGAATGGTAGAGATATTTTGATTTATGAAAAAATAAATTGAGTTCTCTTGAGTTCTTGAGTTCTCTGGAGTTCTAATTTCCTCAGTCATCAGCCTAGTAATAACAACACAGTTTAAATGGTATATTGTTGTCATTGTTCAATCATTAAGTCATTTCTGACCCTTTTTTGACCCTATGGACTGCCATATGCTAGACTTCCCTGTCCTTCACTGTCTCCTGGAGTTTGCTCAAATTCATGTCCTTTGAATTGGTGATGCTATCTAACTATCTCATCCTCTGCCACACCCTTCTTCTCCTGCCTTCAATCTTTCCCAGCACCAGGGTCTTTTCCAGTGATGCAGCTCTTCACATTAGGTGGCCAAAGATTTGGACCTTCAGCTTTGGCATCAGTCCTACCAATGAATATTCAAGGTCGATTTTCTTTAGGATTAACTGGTTTGATCTTCTTGCAGTCCAAGGGACTGGTATGTTAACTCAGTAAAAATTTCTGTGTTTGGTTTTTCCTCTGGGTGGAAAATCTGGGCTATCAATAGAGACTTAGCTGCCCCTCTTACAGCAATCTCACATGAGATGATGCTTCTTGAAACTACCTTCTCTAAGTTACCTCTGCCTATTTGTCCACAATCTATAATTTCTAGAAATCCCCCTCCTTCCTTTGCAATGTATTTTCTTCTGCCAAGTTCTCTTTTCTCATGCCTTATTCTTTTAATATTTTCAGAATGCATAATAGAGTTTTCATTTTTTATATCTCAGAATTTACAAAATGCAATATTCCATTTGACCACAAACATTTTTCCCACTTTACCCTGGCATCTAGCCTGCAGTGTACCGTGTTCAGATTCTGCCCTCAACCAGAGCTCCTACATGAAAGAATAAGTTGACTAGAGTCAGGCCTTGCCCCACTTGCCAAAGCATGAACTGGTACAGCTAGGTCCCCTAGAGAGGTAGGGACACCTTTATGCTGATTCACACAAAGATGCAATATGGGCCAGCATCAGATTTGCTCAGAACCATCTTGAGCCCTAAACATCCTTCATTCTAGGAAACTCTTCAGTCCTAGGCAAACTGGGAGGTTTAGTCACCCTAGTTGGCCTGGGACAGGAAAGAGAGACCCAAGATTTAATCCACTCCAGACTTCTATGAGATTGAGTGAGTCAGTGAAAGTGGCTCAATCGTGTCCAACTCTTTGCAACCCCATGGACTATACAGTCCATGGAATTCCCCAGGCCAGAATACTGGAGTGGGTAGCCTTTTCCTTCTCCAGGGAATCTTCCCAATCCAGGGATTGAACCCAGGTCTCCTGCATTGCAGGCGGATTCTTCACCAGATGAGTCATGGAATACAGTAAAATACAGGTTTGGGAGTTCACATAACAAAGAATTAGATGAAAGTATCTTGAATCTATTTTTTACCCATTCCCAAAATTGAAACTTGAGTTAGGCACAAACCCTGAGGTTGTATTGTTTGAGGTGTTTCCACATACATTTAATGTTCATAAGTACCACGTGAAAGACATATTTTATTATCTTTATAAATAAAGAAAATCAAGACAGACAAATTAAGGCACCTGGGATACCTGGAACTGATCCGGCATGTAGTCCAGCCACATGGACTTCCCTTCCCAAGGGTCAGCCACTAGCTAAGGAGGCCCACACGTGTGGCTCAGCCTCATTCACGGTTGCACCACGGTTACACTTATCGTCGCATCATCCATCAAAATGATGTATACCCAGGAGACAAATTTTTTGTAGAAAAAGGAACTTTGGCAAGAAGCCTGTGTTCATTAAAGAAACGTAAGCCACAGCTGACTTAATGGAACCTTCTTCCACCCGCACAGGTATATACTGTACCAAACCCTTTGGGGCATTAACTGGATAATATTTTTGTAAGGGATCAGACATCTCAATATTTTTTATTTTGTGTAAAAACTTCAAATATTCAAAAATTGATATTTTACATTTCTATAGGACTAGGCAATAGTGTTCTTGCCTGGAGAATCCCAGGGATGGTGGAGCCTGGTGGGCTGCCGTCTATGGGGTCCCACAGAGTCAGACACGACTGAAGCGACTTAGCAGTAGCAGCAGGCAATATTGAGCCATATTGTTCCTTCTTTTACCTTGAAAAAAGTAATCCACTCTTGTGCAACTGTAACATTAAAAAATCACATTATGAATAAACTATGAAAATTAGCTTTAATTGAATGAAAGATATTTTCTTCCATTTCAACAAAAACATTCATTGAGCCAAAGAACAGACTGCTTCACCTTCTTCTGTAGCATATCAAGAACCAACCATTTAATCATATCTTCTCAACTGAGATGCAGAATTGGTTCCAGATGATATAATTCTGTTTTTTATCATACTTTTACCATTACCACTGTGTTTGCTCATTTGTGTTTATATTACTTTTGTGTTACTGTTTTTCAACTGATTAG
Seq C2 exon
GTCTTAAGGAACTTCTTCTATTCCTGTGCTGGCTGGTGTGTGGTAACGTTCATCCTAGGAGTCTGCGACCGACACAATGACAATATCATGCTGACAAAGTCGGGCCACATGTTTCATATTGACTTTGGAAAATTCCTGGGTCACGCGCAAACATTTGGAGGGATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715:ENSBTAT00000043102:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]