MmuINT0133717 @ mm9
Intron Retention
Gene
ENSMUSG00000029249 | Rest
Description
RE1-silencing transcription factor [Source:MGI Symbol;Acc:MGI:104897]
Coordinates
chr5:77704259-77712722:+
Coord C1 exon
chr5:77704259-77704342
Coord A exon
chr5:77704343-77709727
Coord C2 exon
chr5:77709728-77712722
Length
5385 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CTTCTCTTCTTTACCTTTAGGTG
3' ss Score
12.59
Exon sequences
Seq C1 exon
GAGAACGCCCGTATAAATGTGAACTTTGTCCTTACTCAAGCTCTCAGAAGACTCATCTAACGCGACACATGCGGACTCATTCAG
Seq A exon
GTTGGTAAGATGGTGACTGCCAGCATTTCAGTAAATTGTCACTTTTATTTCACTGTGGAAAACTACCTTTAGGAAGAATTTCTTTTAGAATTGAAGTTGAGTTGTTTTTAACTCACTGGTTTTGGAGGTTTTTGTTTTTTCTGTTGTCTGGAACTCACAGATCCACCTGCCCCTGCCTGGAAGTGTTGGGAGTAGAAGCCTGTGCCACTGTGCCAGGCAGGCCCTGCCTTAAAAAAGCAAAACCGTAATGGGAGTGGGGAGGGTAAATATGGGTTCTCTTAGATCAGACTCTAGAACAAAACAGATGTCAACTTACTTGCATGCTTTTTCTGGAAGGGCTTTCTTTGTTTTTCTTTTTGAAGTTGTATTAATAGTGTAAGTATTTTGCTTGTAAGTGCACCATGTGGGTGCAGGTCCTGTGAAGGGCAGAAGAGGATGGCAGATCCCCACGAACCGGAGTGCAGATGGTTAGGAGACACTGTGGATGCTGGAACTAAACTTGGGTCCTCTACAAGATCTTAACTTCTGAGCAGTCTCTTCAGCTTAAAGGGTTCCTAATTTGTTAGAACTAGGAATAAATAGTTCTACACAGTCCACAGGTGAATTTACCCCCCCCCCCCCCCCCCCCGCCCTCACTCTTTTTTTTTTGTATTGTATTGTGTGTGTGATAAAATGATTGTCCAGGGTTGGGGTTTTTTTTTTCCGTTAGTTAAGAGTACATTCCTTTCCCGGAGTACTAGGGTTTGATTTCTTGCACCCTATGGTGGTGGTTCACAATTTATCTTTAACTCTGGTTCCAGGGATCTGATGCCCCTTCTGGCTGCTTTAGGTACTGCATGGGGTATGGTGCACAGATAATACATGCAGGCAAAAGACCCCATACATACAAAACCAACCAAACAAAGGGTTAACCATGTAGCGTAAGCTCCCCTCATCTCTTCCCACTTCAGTTTGCTTATTGCTTGTGTAATGGCTTCCTTGTGCCACCGTAACTGGCCCATCGCTTTCCTCTTTTCAAGGTGGTCTCATGTAGCCCTGGTTGAAGATGACTTTAAACTTTTGATTCTCCTATTTCAGTACATAGCTAAAGATGCCTTTAAATTTTCGACCCCCTGCCTTCACCTCCTAGGTGCTGGGGCTGGGCATGAACTCTCACCCAGTTCAGTGGTGCTAAGGGGATCAGCATACAAAATAAACGTAAAGAAAAGAATGGACAGTCCAATTCACTGATTTACAATAAAGTCATGCAGGGCTATTCCGTGGCTGAAATAGTCACAGTCACTGCTCCCAGGAGTCTCTGTTCTCAGGACACATATGGACATAAAAGACAGATTTGGGGGGCTGGATAGATGGCTCAGCACTTCAGAGGCCTTAGCTGTTCTCTTTTTGAGTTTTTGTTTGTTTGTTTTTTTCGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCTCAGGTGCTGGGATTAAAGGCGTGCGCCACAATGCCTGGCTCTTAACTGTTCTTTTTTTTTAAAGATTTATTTATTTATTTATTATATGTAAGTACACTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTGATCAGATGGTTGTGAGCCGCCATGTGGTTGCTGGAATTTGAACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTTAACTGTTCTTGTAGAGGCCTTGTGTTCAGTTTCCAGCACCCAGGTCAGGTAGCTCATAATTGCCTACAGTTGCATTTTCAGGGAACCTGATGCCTTATGGTCTGTGAGTGAAGTGGATATAACCCCACAGCACTGGTAGGCAAGCACTGAGCATTGGTTTGCTTTGCACCTGAGCATTGGTTTGCTTTGCACCGAGTGCTGCCATTGAGGGCGGTTCGCCCAAGAACTGCTTGTGAGGTTCCTGGGGCAGTTTGCCACCTCTGAGGCCTCATTTTGGGCCGGTTGGAGCCTAACAGTTCCTTCAGGACTGGGCAGCAGCTGCTGGTTCATGCTAAGTTGTGCGTGTGTGCCGCCTAGAGGACTGGTCTGGAGCTGATAAGTTGTGGTGTTTGCTGGAGAACTGAACTGCTATCAAAGATTGAGCCAAAGAGCTATTGCTGACCAGGTCCACTTCCCCCATATCCTAATAAAGTTTATTTTCCACTACCTTGGCTGGGTGGTGGGCTAGAGCAGGGGTGGAATCCTTATTAAAAGTAGGCTGCAAAAAATTTAAGCCTACATCTGAGGGCATCTTGATGTTCCTGATGTATAGAAACTTATCCAGAACACCCACATACACAAAAATAAGTAAATCTTTTAAAAGTATATATACAATGATGCTTGTTTGTACCTGACTTAACAAGTGAGGGTGCTGGCTGCTCAGTCCCCCAGACCTATGGGGAAGGAGCGAGAACCAGCTCCCGTAAGGTTGACCTCTGACTTCTGTCTTCATGTTAACGTGGTGCCCTTTTGCCCCAACACAAACATACATAAAAACCTCAAATGATGCTGGTGTGCAGGGACACAGCTGTAATCCTGCCTCTTGAGGGCTGAAAACTCAGGCCAGCCTAAGCCATGATACTGAACGATCCCAGGCAGTGTGGTGAGGTTAGCCTTAAAATCTAAAGGACCAAAAATAAATGAAGGTTAGCCTAGCCTCTCTCTCTCCTTTTTTAAAGATTTGTTTGTTTCATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTACAGATGGTTGTGAGCCACCAGGTGGTTGCTGGGAATTGAACTAAAGACCTCTGGAAGAGCAGTCAGTGTTCTTAACCATTGAGCCCCTCGTGCCCTCCTCCCCGCTTTTCTGGCTGTGACTGACATGAATCTCTATCCAGATTCAGAACACAGCCTGTAGGGCACATGCGCTATCTGGCCCTGAAGAACATGATTTTACCTTAGTCTCTCAAAATGAGGAGTTAGAATTTAATTCCCAATTTGCCCCAACATCCCATCTTCCCCTTTCTGTGATGTTCTCTGAGCTTTGGATGGTGTAACATAGATGTCTCCGTTAGGGCCGAACATGTCACCATCATTCTCTGGCCAATGGAAGTCTGAACTAGCCTTTCTAGCTGCAGTAAGACTCTTGGCTAACTCTGGATATAGACACAAATATGTAGAAGGAGATTGGAACATGACTATTAGGTGAAACAGGAGTAATGTGTGCATGCCTAGGGCCTACGACCTATGACCTCCCCAGGCACTGGCCCTTGGTCAGATTTACATTACTTACGTTTTTTCAAGACAGAGTTTCTCTGTGTATCCCTGGCTGTCCTGGAACAAACTTAGACTGGAACAAACTTAGACCAGTCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCGGCAGTACCAAATTTTAAAATCAACTTTAATTTATTGTGTATGTGTGGCTGTGTATGAAGATAACTTGTGTATAGAGGCTGTATAGGGACAGCTCTGCCTCCACTGTGGGTCTTGGTGAGAAGTGCCTTGGTGAGGGGCCGCCTTACTGGTCCCCCCCCCTTAAAAAAACAAAATAAAAAAAAAAACTATGCTCAATAGTGTTGGCGTTACAGGTGTGTGCCACCATGCTGGGTTTCACGTGGGCCTGAGGGTTGGCTCCAAGGCTGGAGACAGTCTGAGGCTGGCCTCTTTTAATGTACCTGAAAGTGACCTTGAACCCCTTCCCCCCAGACTGACTGTTAGTGTGATAGACAGGGACCACCAGGCCTGCCTGCCCTGTTGTTTTGCCCAGACTTTCAGTGCTCGTTGCATGCCTGCTTTGTTAGCCTGGTCACAGTCATCAGATGGCTGCTTTCTCAAGGTCTCAGGAGAAGCAGATGCAGAGCTCATTTGCTTTTCCTGACAGGTTTTTTTAACTGTAGAAATGGCCACGAGTCTGTCTATGTGTTTAGTGAATGTTTGTTCCCATTTAGAGCTTTGCTGCAAGGACAGCGTCCACACCTCTCTGCAGACTTGAGTCAAGCCCAGTGCTTCCCTCGACTTGCATTCTTAGGCCCTTTCCCCTCCACATTTTGAGATAGGTTCTTGCTATGTATGGCGCCTATAGTGTATGTGTGGCTGTGTATGAAGTGCCTATAGTGACCTCAGCGTCTTGAGTAGTAGGGATTGCAGGGATTACAAATACCATGCTGAGCTGAACCTCTTAATTTAACAGGGCAGGAACTTGTTACCTACCTACTTACCTAACTGATACACCTGGGTAGGCCTTGAGGGATTCTGTCAACGGACATTTCTAATGGTGTAATCTGTACTACTGTCAGTTAAACTTTATGTCTAATTCTGCTTATGGAAAACTTGGATAATAATAAATGAGGATGTTTGAAAGATTAATTTTCATAAATGTCAATTTCCATTTCTCTACTATGCTTTCCATTGGACCGGTGGGGTATGGATACCAATTGGTAATATTTACTAGAGTGTGATCTAGCTGGGTATGTATTCAGGTAGAACTTTTTTAATGCTTTTAATTTTGGGTGGGTGGGGCCTGGTTTTGTGCCTGTGCCTGTGCCTGTGACTGTCTGCTTGTGTTACACACCATATCTATTTGTATACCACCACTCAAAGTTAGTTTCTTTGCCCTTTTTTTATAGAGAAGTTGATATAGAAAAAAATTACTTAAGTTTTCTAGTTGACTTCAGCCTTATTTATGCTTAAAAATAGTCACTGCCATTAGAGAGACGCTCAACTATCACCTTCCGGTGATGGGTGAAGGTTAAACTGACTCCTTTAGCTGAGGCAGAGCCTTAAAGAAAGCTTAGACCTCTAGCCTGTGACTGAAGCTCCACTTCTGGGGCCCCCTTATGGGTGCAAGTGTTCTCTTGTCTTACATTCTCCTTTTGGTTAAGAGAATTCTAGAGGGGGAGGAACAAGACAGTCAAAGCATTTTTGTCTTAGAGTGGCTTTGTCCCCCACTCATCGTCACAGGCTCATGACTGTCCCAGCGGTTCCTGCTTCCCCTGGAGCCTGGTCTGAAGTAGAGCCGGAGGGCTGACTCTAAACTGTTTTGAAGATCATGTTGATCACTCCTCCAATTGATTTTGAAAATCAAGCCTACATCCCAGATAGGGAAAAGTTATACAAATAAATATGGAAAATACAAGGTGCATGATCAAGTCATTCCAATAAATGCTCTTTGTTCTTATTTTACGTTTATAGCTCCTAAGGATATTTTAATGTTGACTTGTGTCTTTTATCTCTGACTTCTCTTCTTTACCTTTAG
Seq C2 exon
GTGAGAAGCCATTTAAATGTGATCAGTGCAATTATGTGGCCTCTAATCAGCATGAAGTGACCCGACATGCAAGACAGGTTCACAACGGGCCTAAACCTCTTAATTGCCCGCACTGTGACTACAAAACAGCAGATAGAAGCAACTTCAAAAAGCACGTGGAGCTGCATGTTAACCCACGGCAGTTCAACTGCCCCGTGTGTGACTACGCGGCTTCTAAGAAGTGTAATCTACAATACCATTTCAAATCTAAGCATCCCACCTGTCCCAGCAAAACAATGGATGTCTCCAAAGTGAAGCTAAAGAAAACCAAAAAGAGAGAGGCTGACCTGCTTAATAACGCCGTCAGCAACGAGAAGATGGAGAATGAGCAAACAAAAACAAAGGGGGATGTGTCTGGGAAGAAGAACGAGAAACCTGTAAAAGCTGTGGGAAAAGATGCTTCAAAAGAGAAGAAGCCTGGTAGCAGTGTCTCAGTGGTCCAGGTAACTACCAGGACTCGGAAGTCAGCGGTGGCGGCGGAGACTAAAGCAGCAGAGGTGAAACACACAGACGGACAAACAGGAAACAATCCAGAAAAGCCCTGTAAAGCCAAGAAAAACAAAAGAAAGAAGGATGCTGAGGCCCATCCCTCCGAAGAGCCTGTGAACGAGGGACCAGTGACAAAAAAGAAAAAGAAGTCTGAGTGCAAATCAAAAATCGGTACCAACGTGCCAAAGGGCGGCGGCCGAGCGGAGGAGAGGCCGGGGGTCAAGAAGCAAAGCGCTTCCCTTAAGAAAGGCACAAAGAAGACGCCGCCCAAGACAAAGACAAGTAAAAAAGGTGGCAAACTTGCTCCAAAGGGGATGGGGCAGACAGAACCTTCTTCTGGGGCATTGGCTCAAGTGGGGGTGTCTCCAGACCCTGCCCTCATTCAGGCAGAGGTCACCGGGTCAGGATCTTCTCAGACAGAGCTTCCTTCACCCATGGATATTGCTAAGTCAGAGCCCGCCCAGATGGAGGTTTCCCTAACAGGGCCACCTCCGGTGGAGCCTGCTCAAATGGAGCCATCGCCTGCGAAACCTCCCCAGGTAGAAGCACCCACTTACCCCCAGCCTCCCCAAAGGGGGCCTGCCCCTCCCACGGGGCCTGCCCCTCCCACGGGGCCTGCCCCTCCCACGGAGCCTGCCCCTCCCACGGGGCTTGCCGAGATGGAACCTTCTCCCACGGAGCCTTCCCAGAAGGAACCACCTCCCAGTATGGAGCCTCCCTGCCCCGAGGAGCTGCCTCAGGCCGAGCCACCTCCTATGGAGGATTGTCAGAAGGAGCTGCCTTCTCCCGTGGAGCCCGCTCAGATTGAGGTTGCTCAGACGGCCCCTACGCAGGTTCAGGAGGAGCCCCCTCCTGTCTCGGAGCCACCTCGGGTGAAGCCAACCAAAAGATCATCTCTCCGGAAAGACAGAGCAGAGAAGGAGCTGAGCCTGCTGAGTGAGATGGCGCGGCAGGAGCAGGTCCTCATGGGGGTTGGCTTGGTGCCTGTTAGAGACAGCAAGCTTCTGAAGGGAAACAAGAGCGCCCAGGACCCCCCAGCCCCACCGTCACCATCGCCAAAGGGAAACTCGAGGGAAGAGACACCCAAGGACCAAGAAATGGTCTCTGATGGGGAAGGAACTATAGTATTCCCTCTCAAGAAAGGAGGACCAGAGGAAGCTGGAGAGAGTCCAGCTGAGTTGGCTGCTCTCAAGGAGTCTGCCCGTGTTTCATCCTCTGAACAAAACTCAGCCATGCCAGAGGGTGGAGCATCACACAGCAAGTGTCAGACTGGCTCCTCTGGGCTTTGTGACGTGGACACTGAGCAGAAGACAGATACTGTCCCCATGAAAGACTCCGCAGCAGAGCCAGTGTCCCCTCCTACCCCAACAGTGGACCGTGACGCAGGGTCACCAGCTGTAGTGGCCTCCCCTCCTATCACGTTGGCTGAAAACGAGTCTCAGGAAATTGATGAAGATGAAGGCATCCATAGCCATGATGGAAGTGACCTGAGTGACAACATGTCTGAGGGGAGTGACGACTCAGGACTGCACGGGGCTCGGCCGACACCACCAGAAGCTACGTCAAAAAATGGGAAGGCAGGGTTGGCTGGTAAAGTGACTGAGGGAGAGTTTGTGTGTATTTTCTGTGATCGTTCTTTTAGAAAGGAAAAAGATTATAGCAAACACCTCAATCGCCACTTGGTGAATGTGTACTTCCTAGAAGAAGCAGCTGAGGAGCAGGAGGAGCAGGAGGAGCGGGAGGAGCAGGAGTAGCTGAGCCTCGGCAGAAGCACCGTGCAGACTTTGTGAGCATGCAATTTTAATTTGTAGACAAACGCAAGCTTGCTTTAATTAGTCTCCAAGGCTGAGTTTTCAGTAACATTCTTTTTCTTAGGACTGTACATCTATTTAGTGTTTGTTGCATAAATCTTAGCAAATCCTCGGGAGTTAATGTAAGAGGACAGATATGTAACTAGCTCGTGCAGGCAGGTGCAAGGAGAAGGGTAAGATGGTGGAACACACCACTTGCCTTGTCTGCCTACAACCTGTTGGGTTTTCTTTTCACGGTAGTTCCTAATTTTTAGTTACTTGTTTAGATCGATAAAAATTGGCTTAGTAAATTACTTGAAGAATTTGCCTGCTTTATATAAATTAAGTTAGCACTTTACAGTTTCTTTAGAGATGAAAAAAAAGAGATTTTAATTGGAGAGAAATTCTCAACATTGGACATTGTATCTGTCCAGGTAATTGCTTCCTAACTTGCTATCAATATTTTGTGTTTATATGTTAATCGTTATAAAAAGTGATTTTTGTTTTTTGGGTATTTTTTATTTTGGTGCTTTTCTGGCTTAAGATGTTGCACATGGTTCTTGTTTTTGTTTCTTTAACCTATGCAGTTAATCTCCCTTCCCCTGAAACAGCGTTGTGTTAAATAGTAACACTATACAGATATATGCATGGTTTTTTTTTTTGTTTGTTTGTTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029249-Rest:NM_011263:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.861
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=2.0),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.4),PF121713=zf-C2H2_jaz=WD(100=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: