RnoINT0126037 @ rn6
Intron Retention
Gene
ENSRNOG00000002074 | Rest
Description
RE1-silencing transcription factor [Source:RGD Symbol;Acc:621069]
Coordinates
chr14:33136330-33143448:-
Coord C1 exon
chr14:33143365-33143448
Coord A exon
chr14:33137685-33143364
Coord C2 exon
chr14:33136330-33137684
Length
5680 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CATCTCCTCTTTACCTTTAGGTG
3' ss Score
11.9
Exon sequences
Seq C1 exon
GAGAACGCCCTTATAAATGTGAACTGTGTCCTTACTCAAGTTCTCAGAAGACTCATCTAACTCGACACATGCGTACTCACTCAG
Seq A exon
GTTGGTAAGAGATGGTGACTGCCAGCATTTCAGTAAATCGTCATTTTTATTTCACTGTTGAAAACTACCTTATGAAAAGCTTTCTTTTAGAACTGAAGTTGAGTTGCTTATAACTTACTGTTTTTGGAGGTTTGTTTTTTTCCTTAGATGTGTTCTTATTACATAGCTACTGCTGTGTGGAACTCACAGATCCACCTGCCCCTGCCTGGAGGTGTTAGCTTTGAAAGCCTGTGCCATGGTGCCAGGCAGACCCCACCTTAAAAAAGCAAGACCATAATGGGAGGGGTAAATATGGGTTCTCTTAGGTCGGACTCTAGAACAAAACAGAAGTGAGTTTATTTGCATGCTTTTTCTGGGAGGGCTTTGTTTTTTTTCTGAAATTTTATTAATAGTACGTGAGTATTTTGATAATAGTATGTGAGTATTTTGTTAATAGTACGTGAGTATCTTATTAATAGTATGTGAGTATTTTGCCTGTAAGTGCACCATGTGGGTGCAATGCGGTTTCTGTGGAGGCCAGAAGAGAGTGACAGATCCCCCCCCCCCCCCCCCCCGGGTGCATTGGAGTTTACAGGTGGTTAGGAGACTCTGGGTGCTGGGAACTAAACTTGTCTGAGCAATCTCTTATGCCCAAAGGGTTCCTAATATTTGTTAGAACCGGGGAGAATTCTACATAGTCCACAGGTTAATTTATCCCATTTTCTTTTGGATTGTGTGTGTGATAAAGTCCGGGGCTGGGTGATTCTCATTAGTTAAGATGAGAGTACATTGCTTTTCCAGAGTACTAGGGTTCGATTTCTAGCACCATATGGTGGTGGTTCACAACTTAATCTCTCGAACTCTGGTCCCAGGGCATCTAATGCCCCTTCTGGCCTCTGTAGGTACTGCATGCATATGATGCACAGGAAAAAAGGACCTCATAGGTACAAAAACAAAGGATTGGCAGTGTAGCCTAAGCCTCCCTCATTCTCTTCCCATCTCAGTTTCTTTATTGCTTGTATTATGACATTTGTGTACCTGTCCTCTTCCCTTCTGTCTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTCCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCACCTTCTGTCTTTTTTTGAGGTGGTCTCATGTAGCCCAGGTTGAGGATTCTCTTATCTCTTAGTACATAGCTGAAGATGTCTTTAAATTCTCGGCCTCCTGCCTTCCCCTCTGAGGTGCTGGGGTTAGGCATGAACCCCAGTTGAATGAATTCCAGTTCAGTGGCGCTAAGGGGACTAGTGTACAAAATAAATGTTAAAAAAAAATAATGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCGAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAGAAAAAAAAAATAATGGATGATCCAGTTCACTGACTTACCGCAAAGTCATCACATAGGGCTATATGGTGGCTGAAATAGGATCACCGCTCTCAGTGGTCTCTGTTCTCAGGACATAGAAAAACCTAAAAGCAGATTTCGGGGGCTGGGTAGATGGCTCAGCACGCAGGTGTGGTAGCTCATAATCGCCTATAGCTGCATGCACTCAGGGAACCTGATGCCTTACAGCCCCTGAGTGAAGTGGCTATGACCCCATGAGAGTTGGGGGTGAGCACTGAGCATTGCTTTGGTTTGCTCCAAATGCTGACATTTTGAGAAGCTTGCCCACGAACTTCCACGAACTGAGGTTTCTGTGGCACTTTGCTGCCTCTGAGGCCTCACTCCCAGCGGGTTGGAGCCTAAGGGTTCCTTCTGAACTAGGCAGCAGCTACTGGTTCACGCTCAGCTCCTGTGTGCTGCCTAGAGGACTGGTCTGGAGCTGATGATGCTAACTACTGAGTGCTGTCAAAGGTGGAGCCAGTCCCCAGGAACTATTGCTGAACAGGTCCACTTCCCCATATTCTAATACCTTTTCTTTGCCACTACCTTGGCTGGTGTGGGCTAGAGCAGAGGTTGAACCCTTATTAAAAGCAGGCTGTAAAAAATTTAAGCCTACATCTGAGGGCATCTTCATGTATCTCAGGTATAGAAACTTAACGAAGGAACACCCACATACGCAAAAATAGTAAGTAAATCTTTTAAAAAGTATATGTTTTCTACATGGCCTAACGAGTAAGGATGCTTGCTGTCAGTCTGATTCCCCAGACCTGTGAGGAAGGAGAACCAACTCCGTCAGGCCGGTCTCTGACACCTTCACAGTTCTGTTGTGCCCTATTGCCCCAACACAGACATACATGCAAAAACTCAAATGTTGCTGGCATGCTGGTACACAGCTGTAATTGAGAGTTGAGGCAGGAAGAGGGTTGGAAATTCAAGCCGGCCTAAGCCATAATACTGAACTATCCCAGGCAGCATGGTGAAGCTAGCCTTAAAATCTAGGGGACCAAAAATAAATGGTTAGCCTGGCATATCTTAAAAGACTTTTGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAGAAAAAAAAAAAAAAGACTTTTTGGTGGTGACTGGCTTGAATCTCTCTATCCAGATTCAGAATACAGAGCCCTTAGGGCACGTGTGCTAACTTCTCCATGTTTGCCCCTGGATAACAAGATTAACTTAGCCTCTCAAGATGAAAAGTTAGAATTTAGTTCCCGACCCATCTTTCCGCCTTTCTGTGATGTTCTCCGAGCTCTGGGTGGTGTGACGCAGATGTCTTATTCAAGGCAAAGCATGTCCTCCTCATACTCTGGCCATTTGAATCACTGAACTCTAGCTGCAGTAAGCATCTTGGCTAACTGGATATAGACGTAGGTATTTAGAAGACAGTTTGGGACATGACTGTTAAAACAGTAGTGTATGCACTATGACCTCCCTGGTACTGGGCTCTTGGTCAGATTTACAGTATCTATTTTTTTTTCAAGACAGGGTTTCTTTTTTTTTTAATTTTACTTTAATTTTTTTTTTTTTAAATTTAATGTATATGAGTACACTGTCGCTGTCTTCAGACACACCAGAGGAGGGCATCAGATCTCATTACAGATAGTTGTGAGCCACCATGTGTGTGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAAAACAGGGTTTCTTTGTGTAGCTCTAGCCATCCTGGAACTGCAGTACCAATTTTTAAAATCAAGTTTAATTAATTTATTGTGTATTGTGTATTCTTGAGGCTGTGCCATCATGGCTTGTGTATAGAGACTACAAGGGGACAGCTCTGCCTTCACTGTGGGTCTTGTTTAGGCATGGCGAGAAGTGCTGTCTTGCTGTCTCTCTCTTTTTTTTTTTTTAAGAACTATGTTTCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCAAAAAAAAGAACCAAAAAAAAAAAGAACTATGTTTCAGAATGTTGGCATTACAGGTGTGTGCCACCGTACTTACTGGGTTTCATGTAGGCCTGAGGATTGAATCCAAGGCTTGGTATTTTGTTTTGGGGACAGTCTCAGGCTGGCCTCTATTGAACTCTTTCCCCCAGACAGTCACTGTGATAGGTACCACCAGGCCTGATCTGTCCTCTTGTTCTGCCCAAACTTTTCCAGTGTGCAATTACAGGCCATGCACATTGCATGCTTGCACGAAGTTCACACTAATCACATTACTATTGGCAAGACTTTGTCCCTCTCCAGGCCTCAGAAGAAACAGTTGTAGAGTTCATTGGCTTTTCCTGATGATTTTTTTTTAACTGCTGAAGTGATTTTTTTTTTTTTTAAACCGCTAGGCCATCAGTCTGCTTCCAGACTGTATGTTAAAGCAAATGTTTGTTTCCTTTTTCTTTTTCTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCTAGGGCCTTGCTCCTGGTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCAAATGTTTGTTTCCATTAGAACATTACTGCCAAGGACACTGTAGGGAAAGTGGAGGAGGAATGTATGTGCTGTGGAAACTGTCCATACCTTTCTGCAGACTTGAGTCAAGCCCAGGGCCTTTCCCTACTGACTTACATTCTTTAATTTTGTTTTTTTCCCCCCCATCTTTATTAACTTGGGTATTTCTTATTTACATTTCAGTTGTTACATATTCAATTGTTATTCCCTTTCTCGGTTTCCGGGCCACCATCCCCCTATCCCCTCCCACTCCCCTTCTCTACGGATGTTCCCCTCCCCATCCTCCCCCCATTACCGTCATGTCCCCCCCCCCCCCACTTACATCCTTAGGCTCTTTTTTCCCCTCCACATTTTGAGATAGGCTCGGGCTATGGTGTCTATATTGGCTTCAAATACAGTGGTCCTCTTGCCTCAGCCTCATGAGTAGCAGGGATTACAGGAATGTGCTACCATGCCTAGCTGAAACTCTTAATTTAGCATGGCAAGAATTTCATGTGTTTACTTACCTAATTTGTTATACCTGAGGAGGCTTTGAGGGAGATTTGGGATTCGTTCAGCAGACATTTCTAATGGTGTAATCTATAATATTGTCATAGTTAAGCTTTATGTCTAATTTTGCTTGTGGAAAACTTGGATAATAATGAGGATGTTTGAAAGATTAATTTTCATAAATGTCAATTTCCATTTCTCTATGCTTTCCACTGGACCGGTGGGGTATGGATACCCATTTGGTAATATTTACTAGAGTGTGATCTAGTTGGGTATGTATTCAGGTAGAATTTTTTAATGCTTTTAATTTTGGAGCGGGTGGGGCCTGATTTTATTTGTGTCTGTGATTGTGACTGTCTGCTTGTGTTACACACCGTATCTATTTGTATGCCACCAATCAAATTTAGTTTCTTTGCCCTTTTTATAGAGTAAGTTGAGAAAAAAATCACTTAAGTTTTCTAGTTGACGTAAGCCTTATATTTGCTTTAAAACAAACCGTGCTGGGTGCAGCTTTACTCTCTCACCTGGAGGGATGGGTCAAGGTTATTCCCCCTAGCTAAGGCAGAGCCTTAAAACTTAGACCTCTGGCCTGTGACTGAGACCCAGACTCCACTCCCAGGGTTACCTTACAGATGTGAGTGTTTCTTACTGTGTTACGTTCTACTTTTGATTAAGAGAATTCTAGAGGGTGAGGAACAAAAAAGTGAAAGCATTTTTCTCTTAGAGTTGCTTTGTCCCAGAGACAGCGCCAGAGGCCCTCAGACCGCCAGCCATGCCTGCTTTCTGTGGAGCCTGGTCTGTAGTAGAGCCATTGAGCTGCCTCTAAATGGTTTTGAAGATAATGTTGATTATTCCTCCAATTGATTTTGAGAATCAAGAGTCCATCCCAGAGAGGGAAAAGTGATACAAATAAATATGGGAACTAGAAGGTGCATGATGAGTCTTTCCTACAAGTGCTCTGTGGTTATTTCACCTTGATGACTCCTGAGGACAGTTTCATGTTGACTCGTGTCTTTTATCTCTGACATCTCCTCTTTACCTTTAG
Seq C2 exon
GTGAGAAGCCATTTAAATGTGATCAGTGCAATTATGTGGCCTCTAATCAGCACGAAGTGACCCGACACGCAAGACAGGTTCACAACGGGCCTAAACCTCTTAATTGCCCTCACTGTGACTACAAAACAGCCGATAGGAGCAACTTCAAGAAGCACGTCGAGCTGCACGTCAACCCTCGGCAGTTCAACTGCCCCGTGTGTGACTACGCGGCCTCCAAGAAGTGTAACCTGCAGTACCATTTCAAGTCCAAGCACCCCACCTGCCCCAGCAAGACGATGGACGTGTCCAAAGTGAAGCTGAAGAAAACCAAGAGGAGGGAGGCTGACCTGCACCGTGACGCCGCCGCCGCCGCCACTGAGCAGACGGACACAGAGCAAGCGAAAACCAAGGGGGTGGACGCGTCTGCGAGGAGAAGTGAGAGGCCTGTAAAAGGCGTTGGAAAAGATGTTCCAAAAGAGAAGAAGCCCTGTAGCAATGCCTCTGTGGTGCAGGTAACTACCCGAACTCGGAAATCAGCGGTGGAGACTAAAGCAGCGGAGGGAAAACACACAGATGGACAGACAGGAAACAACGCAGAAAAGTCCTCTAAAGCTAAGAAGAGCAAAAGGAAGATGGACGCCGAGGCCCATCCCTCGGCTGAACCTGTGACTGAGGGACCCGTGACAAAGAAGAAAAAGACGGAGAGCAAACCCAAGACCAGCGGCGAAGTGCCGAAGGGCAGCAGAGTGGAGGACAGGAAGGCGGACAAACAGCAAAGTGCTTCCATTAAGAAAGGCGGGAAGAAGACGGCTCTCAAGACTAAGACAGCTAAAAAAGGCAGCAAACTTGCTCCTAAGGGGGTGGGGCACACAGAACCTTCCTCGGAGATGGCTCAAGGAGGGGAGTCTCCAGTTCCTGCTCTCACTCAGGCGGTGGTCACCCCATCAGGATCTACTCAGACAGAGCTCTCTTCTCCCATGGATATTGCTCAGACAGAGCCTGCCCAGATGGACGTTTCCCAGACAGGGCCGCCTCAGGTGCAGCGGCCTCTTCCTGTGGAGCCTGCTCAATTGGAGCCGTCTCCTCCTCAGGAGCCTCCCCAGGTAGAGCCACCTGCCTGTGTGGAGCCTCCCCCTCCCGTGGAGCCTCCATGTCCCATGGAGCCTGCTGAGATGGAACCGTCCCCTCCCATGGAGCCTTCCCAGGTGGAGCCACCTCCTCATTTGGAGCCTCCGCTTCCCATGGAGCTGCCTCAGGTGGAGCTGCCTCCTGTGGAGGATTGTCAGAAGGAGCTGCCTTCTGTGGAGCATGCTCAGACTAAGGTTGCTCAGACAGGTCCTACTCAGGTGGGAGCTGTTCAGGAGGAGCCCCTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002074:ENSRNOT00000002837:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.840
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=3.3),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]