GgaINT0077932 @ galGal4
Intron Retention
Gene
ENSGALG00000011390 | REST
Description
RE1-silencing transcription factor [Source:HGNC Symbol;Acc:HGNC:9966]
Coordinates
chr4:48626470-48632680:-
Coord C1 exon
chr4:48632597-48632680
Coord A exon
chr4:48628167-48632596
Coord C2 exon
chr4:48626470-48628166
Length
4430 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TTCCACCCTCCCTTCTTTAGGTG
3' ss Score
11.79
Exon sequences
Seq C1 exon
GAGAGCGACCCTATCAATGTGCTATGTGTCCCTATTCCAGCTCTCAGAAGACCCATTTAACCAGGCACATGCGCACCCACTCAG
Seq A exon
GTTGGTAAGCAGCAGCAGCATGACTCAGAAAAAGGGGTGGTTCTGCGTGACATAAAGTTGTCATCTCATCCAGCGTGACCTGAGCTTTAGCTACCTTTCTCTTTTCTAACAGCTAAGGTCGTTCCTACCTGCTAAAGAAATGTGTCATTAATAAAAGCAGTGACAGGGGAATATGCCTTCTTTTCCTTTTTTGCTATCCAGGATGTATTCTGAGATTCATAGGACCGCTATAGTAGTGTAGTAAATCCAGCACTGTGCTAATGTATGATCAGGCTCTTGTTTTCTGTCTGCTGTCATAGATCAGTTCAAATCAAGTACCAGCAGGATGGTGAATGACCATCTGAGGAAATCCTTATACTTCGCTTGGTGTTACAGAGAGATAACGAAGTAGTGCCTGATTCTGGCAAGGAGACAAAAAGGAGGAATAAGCAAACTTAGAAGAGTGATTTGATCTTGTGGTACTAAAAGCCAAATTGGCAATTCTCACTAGCCTTTATATCTCTTAACTGGTCATAAAGCTGTGATGTTAAGAACTCCCTTCTCTCCTTTGCTCTGTTTCTCCCGTTAGTCTTATTTTTAAATTAAATAATGGCATTCTTATGAACTTTTACTCCCATAATCATGCTAGACACAAGCACAGCTGTGCTTTGTGACCCCCTCTTAGGGGAGCTTAGATGGATCTCAGCTCATGCTCTTGGTTTGCTAATATATGAATTGATCAGACCTAGGTGAAGTTCTAATCCTATGAAACAGTAACTAAAGCATCCTGAACAGTCATTTCAATTTCAATAGCTGAGACAAGAAGGCACTTCTAATTCTTTTGTGCTGAGGGTTTGGACCCATTAAAAATTGGCAGCTTTAAAATGACCTGCCAGTATTTTAGTTTGAGACTTTTTCAATTGAAGCCTTCTGCTTTCAGAAACAAAAAACATTTTTGACTGCACATCTGTGCTAAATATGCATTTGTAAATGGTTTGGTCAACACTGTGCCTGGAAACTGTTTTTTCATCATCTTTTTCTTCTCTTGTCTGTGCAAAGAGCAAATCTGTGCAAATTGGAAAGAGGTGAAACAGTGGGATTTGCCCTTGGTAATTGACTTCAAAGTCTGGGAAGGAGAGCATGAACTGTGCTGACAAGTGGGATTGCACATGGGACTCTTGCTGTCGTAACATCACAGAATGGCTTGGGTTGGAAGGGACATTAAGGATCATGTAGTTCCAACCCCCTGCCACCGTGTGCAGGGCTGCTCTTCACCAGATTAGGCTGCCCAGGGCCCCGTGCAACTTGACCTTGAATGCCTCCAGGACTGGGGAGTCCACAGCTTCTCTGGGTAGCCTGTGCCAGGACCTTGCCACTCTCTGAGTAAATAATTTTTTCTTTACATCAAACCTGAATTTCCCCTCTTTTAGTTGAAAACCAACCCTCTCCCTCCCAACCCCCACCTTGTCATGTCACTATCAGACCGTGTAAAAAATCGATTCTCTTTGCTCCCTTTGAGTACTGGAAGGCTGCAATGAGGTGTCCCCGCAGCCCTCTCTTCTCCAGACTGAACAAGCTCAGCTCCCTTAGCCTTTCTTAGGAGAGGTGCTCCAGCCCTCTGAGCATCTTTGTGGCCCTCCTCTCAACCTGCTCCAACAGCTCTGCAAATTTCTTGTGCTGGGGGCCCCAGGCCTGGATGCAGGACTGCAGGTGAGGCCACATGAGAACAGGGGAGGACAATCCCTTCTCTCATCCTGCTGCCCATCCCTCTTGATGCAGCTCAGGATACAGTTGGTTGTCTGGGCTGCAAGTACACACTGCTAGCTCATGTTCATTCACCAGTATCCCCAAGTCCTTCTGGGCAGGACCACTCTCAAATGAATTCTTCTCCCAGTCTGTATGCATATGTGGGATTTCTCTGACCCAAGTACTTGGCCTTGTTGAATCTCATTAGGTTCTTGTGGGCCCACTTTTCAAGTCTGTTCTGGTCTCTCTTGATGGACCTATCCCTAGGGGGTGATACTCATGTCCAGCCTCCACCTGGACATAGAGCCATTTACCACAACCCTCTGATTGTGACCGTCCAACCAATTATTACCCAGCTAATAATTCAGTCTTCAAATCCATGTCTCTCAAATTTAGAGATAGTGATGTGGTGCAGGACCATGTCAAAGGACTTGCACAAGTCCAGGTAGACTATATCACTTGGCCTTCCTTCGTCCACGGATGCTGTCAGTCCATCACAGAAGGTCTCCAGATGGGGCAGGCACAATCTGCCCCCGGTGAAGCTGTGCTGGCTGTCTTGGATCACCTGCTCATGTCTCATGTGCCATAACGTCTCCTTCTGGACGATCTGCTCCATGATCTTCCTGGGCACAAAGATGGGGCTCACCAGCTTGTAGTTACTCTGGTCTTCCTTTCTCCCTTTTTTAAAAATGGGAGAGTTGTTTTCCTTCTTTCCAGTCACTGGGGACTTTGCCTGACAGCTGTGACTTTTTTATATATGATGGAGAGTGGCTTGGCAACTGCATCAGCTAGTTCCTTGAGAACCCTGGGACGTACGTGGCCCCATAGACTTGTATAGATTCAGCCTCATGAGGTGGTCTAAGATTTGGTCTGCTTTTACACTGGGAGAGACTTTGCTTCCTCTTACCTCCATCTAGAGGTTCAGGGACGTGAGAGATGTTGGAAGCCTGACTGCCTGTGAAGACTGAAGCAAAGAACTCGTTGAATACCTCAGTCTTCTCCGTGTATGTTGAAGCCAGTTCTCCCTTCTCATTTATCAGAGGGAGTACACTCTCCTTTGCTTGTCTCTTCTGTCCAGGGTATCAAAAGAAACCATTCTTGTTATTTTTCACATCCTTTGACAAGTTGTGTTCCATCTGTGCCTTGGCTTTCTTGCTTTTGTGATCCCATTTCTATATGCCTAAATGGCATTCCTGTATTCTTCTTAGTACACCCATCCCTGCTTCCACTGTGTGTTCTTTTCCTTCTCTTCCCTCAGCCTGACCAGTAGGTCCTTGCTCAGCCATGCTGTTTTCCAGCCCCCTCTGCTTGATCTCTTATGCTAGTGGTTGGAGAGCTCTTATCCTCTCAGAAGGATGTTCTTAAAGTGCTGCCAGCTCTGTTCAATTTCTCTGTCCCTAGGGACGGTTTCCTAGTAGATCAGGGGATCTCATCCAACAATTCCTTAAATAGCCTGAAGTTTGCTCTCCCCAAGTTCAGAGTCCTGAGGTTGAGTGTCCTGACACCTCTCTTTGCCAACCCCGTGTTCCTCAAGATAGTGAACTTGACCAGAGCGCAGTTGCTACGGCTCAGACTGCTTCCGATCTTAACCTCTTTAATGATCTGCTATGCAGTGGTGTTTTATTAACAGCTGAAGGTAAAATAATCCTTCATTAAATAATAAAGAGATGCTGCAGGCAGAAATGAAATTTTCTAGACTCCTAACCAAGCATCACCCACCCTCTTGCTAGAGAGGCAGCACAACCATGGACGTAAGGATCTGGAATGACTTTTCAATATACCTAGGAAGTGGCATGCATTAGTTTTGGAGGTCAATTTTTAAATGCTAGTTTAGATCTCAGTAGCACCCCTCAGACGAATTTGTATAGGCAAAAAAGTTCTCAAAGTATTTTTGGACTTGGGTTATTGTGCTGAAAATTGCTTTGGAGTGTAAGTGGAAAGCTGATTCCGCTGCATTGGTATGCACTGAGCCTCGCATTTCAAAAACACTTGTGCATGCAGGAGTCGTTTAAAAAATGCAGCTTTCAGTAGTAGTAATGTGATGGCTTTAGACTGCCTACCTATTTCTTGCCAACAGTAGCCTGCAGCCAATCCATAAATGTGACATAAATGAGACAGTGATGAACTCCACTGAACTGAATTTAACAGAGGCAAAAATCATTGAAGTGGCGTGTCTTTCACATGCTTTGTCTTTTGCTAGCTCATTTTCCCTTACTTCCTTTTCAATGCAAACATGAAGTATGCTAAATCTGTGTAAAGTTGGACTTATTTGAAACGTTTGTGTGAAACTTCTATTCATCAAATGTTACATTTCCGTTTTTCTACAATGCATTCAATGGACCAGTTGGGTATGGATTCCATTTGCTAATAGTACTGTAGAGAGATCTCTGCCGGTATGTATGCATAGCCAGAACTTGTGACTTTGTTACTGCTTGTTTGGTTGTGGATCCCCTTCCTCCCAATCCTTGCCCCTTCTCTCTTTTTTTTTTTTGTATATTGTTTTTGGTGTCTTGTGAATGTGTTTGTGATTTGTGGATTTCTTATGTTGATTGTATTTAATTTTAAAGGTGCATGGAGATATATAAATATATATATATATTCTTTTTGAGTTTCATATTTCTGTGCTTGTCTTAGTGCAAAGTGATTTCCTTCCCAACCCTGTGCTTAATAATCACCACAATTCCCTTCCACCCTCCCTTCTTTAG
Seq C2 exon
GTGAGAAGCCATTCAAATGTGATCAGTGCAGTTACGTGGCCTCAAACCAGCATGAAGTAACTCGTCATGCAAGGCAAGTTCACAATGGGCCGAAGCCTCTGACTTGCCCGCACTGTGACTACAAAACAGCCGATCGCAGCAATTTCAAAAAGCACGTTGAGCTCCACGTCAATCCGCGCCAGTTCCTTTGTCCTGTTTGTGACTACGCGGCATCTAAGAAGTGTAACCTGCAGTATCACATCAAATCCAGGCATCCCGATTGTTCGGACATCACCATGGATGTTTCAAAGGTGAAGCTACGGACTAAAAAGAGCGAAGCTGACTTTTCCGAGAGCATCAGTGACAAAGTGGAGAAAGAGCAAACAAAAGGGGATTCGCCCACAAAGAAAACTGAGAAAACTGTGAAAGTGGAGAAAAAAGAGAACTTGGCAAAGGAAAAGAAGCCAACGAGCAATGTTCCTGCACGTCAGGTTACGACCAGAAGTCGGAAATCGACTTCAGAAAACAAGGAGGTAGATATTAAAACTGAGAAAAATACTGAGAAACCCTGCAAAACAAAGAAGGTCAAAAGGAAGGCAGAGGCAGAAATAACTTTCTCAAAGGAAGAGCCTGCGAACGATACCATCGTAATGACAAAAAAGAAAAAGAAAGTGGAAACTAAACCCAGAGACTGTCAGGAAGCTCAGAAAAGTGATGATGTACCAGAGGCGGAACCTAAAAAGCAAAATTCCTGCCTGAAGAAAAGCAGGAAAAAGAAAGCTCTGAAAAGTAAGCACAGTAAGAAAAGCAGTAGACTTGATGAGGAGAAGATGGAAGAAGAGGAGGTGGCGGACAAGTCTCATCTTGTGGAAGAGGATGGATGTATGAAACTCGACAGTCCGAGCAGCGACCAGGAGAAGGAGGAAGATCCTGCTGGTCCAGCACCATTAGACAGTAATGTTGGTCATACTTGCAAGGGGGAGAGCGTCAGTGCCAAAGGAAGCTGCGTACAAGAGCCAAGACAGCTTTGTCTGTCAGCTCAGGTTGCGGACACAGAGGCTGAGGCGAAGGATCAAGAAATGCCTGCTGCAGCAGTGGAGAGCAAAGACACTATCTGTGAAAAAGAGGAGAGAAAGGTGGATACGGCGGAAGACTCAGAAGAATTTTCTCATGCAGTGTCTTCTGAACCAAGTCTGGATGGACCTGTGGATGTACTACCAGATCTGGAGCCCGGGAAGGAGCCAGAGGAAACCTGCTTGGCAGAAACTGTGAGTAACCCAGACCCAGTAGACCTGACTAAGACACACATCCTAGAGACAGAGACACCAGCAGATGCTGTGGGAGCGCCTGTGCCCCCAGAAGGGTGTTTGCAGAGCCCTGAAGTAGCTCTGGCCTTATCACCTCTGGATAACGCAGCAGCGAACGAATCTCAGGAAATGGATGAGGATGAGGGCATCCACAGCCACGAAGGCAGCGACATAAGTGACAACATATCAGAAGGCAGCGATGATTCGGGGTTAAATGGTGCTCGCTCTGTACAAGAGGAAACCAGTCCGAAGACATCACAAGGAGCTGCCAGTAGCACAGCAGTCAGGGAGAACTATGTGTGCATTTTTTGTGACCGCTCATTTAAGAAGGAAGGTGAATACAGCAAGCACCTCAATCGCCACTTGGTCAATGTGTATTATCTTGAGAAGGCAACAAAAGGGCAGGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011390:ENSGALT00000018580:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.765
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=2.7),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF121713=zf-C2H2_jaz=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]