MmuINT0134166 @ mm10
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33935360-33935656:+
Coord C1 exon
chr17:33935360-33935455
Coord A exon
chr17:33935456-33935544
Coord C2 exon
chr17:33935545-33935656
Length
89 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGG
5' ss Score
0.98
3' ss Seq
CTGATATCTTGCCTCTGCAGAGT
3' ss Score
9.68
Exon sequences
Seq C1 exon
TCACCGTGTATCCTGTGAAGTGGAGCCACCAGGGACCAGTGACTCCCCCGCTGCAAGGACACCTCGGCCAACACTAGTGATCACACAGTGGACGGA
Seq A exon
GTGAGGACACTGCTGGCTGGCTGGCTGGGAGCTGGTTTCATGGGGACTTGCTGCTGCCGCTGTCACTGTCTGATATCTTGCCTCTGCAG
Seq C2 exon
AGTTCTGGGCTCTGTTGGAGGCCCCACTCCGCTTGTGTCCTGGGATCGGCCCAGTGTCGGGGGAGATGAGGTGCCTGGAACCCCAGCACCTCTGCTGACTCGCCTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354:ENSMUST00000047503:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=NA C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTATCCTGTGAAGTGGAGC
R:
TTCCAGGCACCTCATCTCCC
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types