HsaINT1029211 @ hg38
Intron Retention
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33293413-33293699:-
Coord C1 exon
chr6:33293604-33293699
Coord A exon
chr6:33293525-33293603
Coord C2 exon
chr6:33293413-33293524
Length
79 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
CCAATCTCCTGCCACTGCAGGGT
3' ss Score
6.68
Exon sequences
Seq C1 exon
CCATCGTGTATCCTGTGAGGTGGAGCCACCTGGTTCCAGTGACCCTCCTGCCCCACGGGTGCTTCGGCCAACATTGGTCATCTCGCAGTGGACAGA
Seq A exon
GTGAGAGATTCACTGGCTGGGGGGTGGTTTCTTGGGACTTCCACTTTTCTCTGATCCTCCCAATCTCCTGCCACTGCAG
Seq C2 exon
GGTTTTGGGCTCTGTTGGGGTCCCTACCCCGCTTGTGTCCTGTGACCGGCCCAGTACTGGGGGAGATGAGGCGCCTACAACTCCTGCTCCTCTGCTGACTCGGCTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441:ENST00000497454:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=0.763
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGTGAGGTGGAGCCAC
R:
AGAGGAGCAGGAGTTGTAGGC
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains