RnoINT0126463 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5460377-5460673:-
Coord C1 exon
chr20:5460578-5460673
Coord A exon
chr20:5460489-5460577
Coord C2 exon
chr20:5460377-5460488
Length
89 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGG
5' ss Score
0.98
3' ss Seq
CTGATTTCTTGCCTCTGCAGAGT
3' ss Score
10.16
Exon sequences
Seq C1 exon
TCACCGTGTATCCTGTGAAGTGGAGCCATCTGGTACCATTGATTCCCCCGCGGCAAGGACGCTTCGGCCAGCACTAGTCATCACACAGTGGACGGA
Seq A exon
GTGAGGACACAACTGGCTAGCTGGGAGCCGGTTTCACGGGCAGGGACTTGCCACTTCCCCTGTCACTGTCTGATTTCTTGCCTCTGCAG
Seq C2 exon
AGTTCTGGGCTCCGTTGGAGGCCCCACTCCGCTTGTGTCCTGGGATCGGCCCACTGTGGGGGGAGATGAGGTGCCAGGAACCCCGGCCCCTCTGCTGACTCGCCTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGAAGTGGAGCCATCT
R:
GTTCCTGGCACCTCATCTCCC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]