MmuINT0134166 @ mm9
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:34072305-34072601:+
Coord C1 exon
chr17:34072305-34072400
Coord A exon
chr17:34072401-34072489
Coord C2 exon
chr17:34072490-34072601
Length
89 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGG
5' ss Score
0.98
3' ss Seq
CTGATATCTTGCCTCTGCAGAGT
3' ss Score
9.68
Exon sequences
Seq C1 exon
TCACCGTGTATCCTGTGAAGTGGAGCCACCAGGGACCAGTGACTCCCCCGCTGCAAGGACACCTCGGCCAACACTAGTGATCACACAGTGGACGGA
Seq A exon
GTGAGGACACTGCTGGCTGGCTGGCTGGGAGCTGGTTTCATGGGGACTTGCTGCTGCCGCTGTCACTGTCTGATATCTTGCCTCTGCAG
Seq C2 exon
AGTTCTGGGCTCTGTTGGAGGCCCCACTCCGCTTGTGTCCTGGGATCGGCCCAGTGTCGGGGGAGATGAGGTGCCTGGAACCCCAGCACCTCTGCTGACTCGCCTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-Rgl2:NM_009059:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.868
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTATCCTGTGAAGTGGAGC
R:
TTCCAGGCACCTCATCTCCC
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: