MmuINT0140025 @ mm9
Intron Retention
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:116952592-116968485:-
Coord C1 exon
chr7:116968279-116968485
Coord A exon
chr7:116952760-116968278
Coord C2 exon
chr7:116952592-116952759
Length
15519 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CAGGGCCATACTCCCTGCAGGCC
3' ss Score
7.45
Exon sequences
Seq C1 exon
CTTCCTGCAATCTGAGCTGCGTGGTAAAGCGGACAGAGAAGAGACTGCGGAAAGCTCTCCGCACACTCAAGAGAGCTGCCCACAGGGAGCAGTTTCATCTGCAGCTCTCAGGCATGGACCTCGATATGGCTAAAACGCCCTCCAGAGTGTCAGGACAGCATGAAGAGACCTGTGGAGTGGGACAGGGTCATGAAGAAAGCCAGTGTG
Seq A exon
GTGAGTAGCCAAGGTGTGATGACTGACAGACCTGCCTGGAGTGCCAGACAGGTGGACAAGGGAGCCAGTGACAGGCCCGGGCCATCCTTCCTTCTCTGGGCTCACCTCGCACTTGCTAACTGCTGAGGTGTAACTTACCCGTCTTTTCCTCATACCTGGCAGGTTTGTTGGCCTGTGGTAGGCAATATTTGTAGGACTGCACAACAGAAAGGAAAATGCAGCGCTGCCTGGTTAGGACAGGATGCGGGCACCACTGAGCCTTTCTACACTCTGTGGTCACAGTTTCTGTCGTTACTATTTTTTGGCTTATTACTCATTCCTGTGCATAGGTTTGTGCAAAGGCAAAACTAGAGGCTGCATAGGTGCCCTGGAGATACCTGGGCCCCAGGCCAAGGCTCCAAGCAGTGTCAATTCCATGGTGTGCTGTTGCTTTGTGTATGTTTTAGAGCAAATATGGTTTCTAAATTCATCAAGGGGCTCCAGGACAAGAGACCCAGGATGGTCGGATATGACATTTTCTCTGTGCAGTTACAAGAGAGACTGGCTGGAGAGCCTCACAGGAGGAGGTTCGAGTCTTCCTTTAGAGTGATGAGTATGGTTGATTTGGTTCTTATCTGTTAGGAATGTGACATTGCCTGCAAACCTTAGATCTAGTGTTAGTCTTCCCGGGCAGGGACCAGCATCTCCTACAGGCAACAAAAGCATGCAGAGGTCTATATTCAGTTGCTTAAAATCTCCCTGGTAGGAGAGACCTCAGGGAGGTAAAGCACACACCATGCAAACACAAGGACCTGAATTTGACCTCTGGCACTCACATAAAAAGCCTGCCTTTGGTAGTACACACTTGGAATCCCACTACTGGAGAGGCAGAGACAGACGATCACTGGAGCTTGCTGGCCCGCCAGCCTTGCCTAATTGGTTTTAGTGAGAGATTCTGTCTCAAAAAATGTCTGGATGTTATCTGGGGAACAACAGCCTAGATTGCCTTCTGACCTCCACAAGTATGCACATGCATGTGCATGCACATATATACCCCACACATACCCTGTGCATGTATCCAAATAATAGTAGTGGGAGTAATAGTAGTTTTTTGTTTTAAGATTGAATTAACAGCCTAATTCCAAAGTCTGTTTCGCTCCTGTGTAAGGTGAAGTTCCGAGAAGGAACGACTGTCTGTTCTTAAGGATCAGTAGACTCTCAGGCTCGAGCAGTGGAGCTTAGGAAAGGGGTAGGAAGTTGACTGGTGTTTCTGCATGTGCACGGCTGAAGCTAGCTTTGTTCTGGAGAACTTTCAACAAGGGCCACCGCTCCAGTCTCTTGCTTCGCCAAAGCTTAGAGACGATCAGGCGTAACTGTCCACAAGGGGCCAGTTCCCAGATAGACTTGACTCTCATTCCAGCGATTTTCTTGAAAAGAAAAGAGGGCAATAAACCCAGCTGGCTGGCTTCTCATTTGGAATCCTCAGAGTTCCAGTCTCCATACTAAATTAGTGACAAGAGCTGGCGCTTGCTGCCCTGCTTTCTAGGGTGAGTGGAATGAACTCTTGGACAAGCAGGCAGGCAGGAGGCCCTCTTTCTGGTCTCAGGGAGCTGAATTACAGCCCCTCTCTTTCCAGGCCTGTGGGAGTAAGAGCTCGTGGATTTATAAAGGAAACTTTGTGGACAGTCAAGAATTCAGGAAAACTAGTGTCAAGGTCTGTGGACCCTGAGAGATCCTGATAGCAAAAGCCCAAGAAGAGGAGCAGGCCTTACTAAATGACTTAGGCTGCGTGGCCACAGACCTATGGGGGAACACCCAATAGAGCTAGGTATACGAATGTGTCGCTGATATGCCAATCAGCTAAATTTGGTTGGGTTTGTTTCTTAAAGAGGCAGTATGTTTCCCAAGAGCTTTCACAAACTCTAGATGAGTCTGGTACCCAACATGGGACCAGGTCAGGCAATGATGTGGAAGACTTTCCTGGGGGATGAACACAGCATAGGAATTGTTAGTGAGGGGGGATTAGATATAAAGAAGGGTCTGGTCTACTGATTAGAAAGGACTTGAGAGGCCATGAGAAGGCTCAGCAGGTAAAGGCGCTCGTAGCCAAGGCTGGCCACTGAGTTTGATGCCTGGGATGCTCAGGGTGGGAGGAGAGAACAACTGAAGGTTGTTCAGGCCTACTGATATTTTTGAATATCAGTGAACTCTATTTGGCATACAATGGAGATAAGCCTAGGATAGTCCGTGGTTCATTTTAGACAATATTTTCAGCTTCTGTTTATTAGTGTTCTTGTTACTATAGTGAAACCCTGGAGGTTGGGTACCTTTACAAAGAAAGAGGTCTATTTTGGCTTGTGATTCTGTGTGTCAGTTGTAAAAGGGCCATATCACATGATGGCCATTTTTTGGTCATAGTTTCGAGGAGGCCATGGCCTCAGATGGTGAAGATGAGGGCTCACATGTGGCTCTTGATTTTTCCCCCCTCTTTTTTTCTTTTCTTTCCTGTTTTGTTCTCTTAGTGTCTTATTGTGTCGTCCTGGCTCCTTGATTTAACTGATCTTCCTGCCTCAGCCTTCTTGAGCACCTGAAGCCATTCTCTCTATTGTTTGTTTTTCTTTTTTGAGACAGGTTTTCTCTGGGTAGCTTTCCTGGAGCTTACTCTGTAGATCAGGCCAGCCTTGAATTCAAGAGATCCTCCTGCCTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAACACACAGCCTGGCTCTCCTCCTCCTCCTCCTTCTTAAGATTTTATTTATTTGTTTGTTTGTTTGTTTGTTTGCTTGTTTATTATTCTATGTATATGAGTATGCTGTAGCTGTACAGATGGTTGCGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAGAACATCTGCTTGCTTCAGTCAACCCTGGTCGCTGCGCCACCCCCCCACCCTCACCCTCACTGTATTCAGACAGACCAGAAGAGGGTGTCAGATCTCATTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTCGGAAGAGCAGTCGGTGCTCTTAACAGCTGAGCCATCTCTCCAGCCCTCCTTATTCTTCTTAAGCCACAGTGTTTGGTCACATGGTCCCCAGTCTTATAAATTTATATAATTCCAATCATTTCTTCCACAAACCAACCTCTAGGTTTTTTTCTTTATCTTGTCAATACTTAATATCTAATGAGGATCAAATTTCAACATATGTATCTTTCAAACCATAGCAGAGCCTCAAGAAGGTGTTTTGAATGGCCAGGAAGGAGACTGGAAAGCACTCTGCTTCTTTTTAATTATAGATGTGGTATAATATATTTCAAATGGTACAGTAATATATAATGCTGAACATTCTCCCCACAACTCCCTAATCCCACTTCTCAACACTGTTAACATGTGCTGTTTTTATATGCTTTTATGCATACATAAAAGTAAAATGTTATTTATTCATCAATAAGTATTTATTAAGCTCCTGCTGTGTACTAAGTACCATTGTAGATGCTGAGACTCCAGTAGAGGAGATAGACTAGCAAAAGTCTTCGTCCTCTTGAAGTTTATAATTTTAAGAAGAAGCAGGTAGCTACTCCCTAAGCAAGGGACAGATTATTCATCAAATGCTGACAAGGATATGGAGAACAAATCACATGGGAAGTGAAGTAGAAAGACCCCAGGCAAGGTGAAGAGCAGGGAGGGATCATGGTCTCCATGATGTAGATGAGGTCAGAGAAGGCCCGAATGCCAAGCGTGATGGTACAGACACACAAAGGGAAGAGAGTGAACTTAGGGTACTCAGATGAAGAACGTTTTAGGCAAAGGAATGAGAAGTAGAGCAAGCCCCATAGGTATTAGAAGGAAGCACAGGATGATGGGGCTGGGGTGGAGAGTGACCTCAGTGTGATGGGGCTGGGGCAGAGAGTGACCTCAGTATGTTTTCCTTCCGGTGGTTCTGGAGCTCGACCCAGGGACTCCCCCACTCCGCACTGCCAGCCTGCATCTAAGATACCAGCATCTGTCAGCCTGGCCCCTGGGAGTAGACATTGACGTGATTCCTAATTTTCCTTTTACAAACAGAGCAACTGTGGATAGCCTTCTTTGTGCACACACCAATATTCTTGAAGGCTAGAATCCTGGAATTATAACTGCCAAATCAAGAACATGCATATATAAACATTGGTAGATATTGCCAGCTTACTCTTCCAAATCCCCCCTCAAAGCATATGCCTCCAGCACCACGTGGGTCTTTAATGTCCCACATCCTCAAGCTTATGAAATAGTTATCATTAATCCTTTAATCTTTGCAAAACCCAGCAAGGAGAAAAAAAAATCACTAACTTTTTTGATCATTAAGAACACACAAATATACTGTCTTAAAGTATTTATATTTCTTCTTTTAAGAGCATTTATAGGTTTTGTCATTTAATGTAAATTTAATTGTAATTTAATTTAATAAAACATTTACAAAATTTAAAAAATATATTTTAAAATATTTAAATATTTTATTAAAATTTAAATTATTGAATATAGAAGTCTATGTTCAGTTGCTTAAAATCTCACTGGTGGGAGATACTTCGGGTCAGAAAAAAAAAATTAGCCAGGCATAGTGGTGCACACCTTTAATCGCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGTGAGTTGAGGCCAGCCTGGTCTCCATACCTAGTTCCAGAATAGCCAGGGCTACATAGTGATAACCTATCTTGAAACAAAACAATAAATAAAAAGTAAAATAAAACTTAGGCCAGACTAGATGATTCCGTGGGTGAGGGGACTTGCCACTAAACCCGATGATCTGAGTTCAATTTCCAAGTCCCACATGGTGAAAATTCATAACCAGCCCCCACAAGCACTCCTGTACCCCCACCCACGCTATTGCACGCATAAGTGCACACGTGCTCTTGTGCACACACATAAAATAATTTAAATTAAAAAAAATGTAGCCGGGCAGTGATGGTGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAATAAAATAAAATAAATATAAAATAAAATAAAATGTAAAGTTCCAAGTTACACCAAAGACACATTTGATCAAATTGAAAACCTTTCTTATTGTCATTTGTACATAGCAAAGTTTATGAATTTGGCATTTAGGGGCAGCCTGTTCTTCAAGCAACCTTTGTACCATCTGTGATCAACTTTAGCAAGATGTCAGAAAAGAAAAGCAATTCTGGGGCTGGGGACATGGCTCAGTCTGTAAAGCGCTGGCTGTAGGAGAACGAGGACCCGAGTTTGTATCCCCCGTACCCACATAGGAAGCCAGGCATGGTGACATGTGCCTGTATACCTGACTGGGAAACAGAATCAGGCAGGCCACTGGAACTCACGGGCTGGCCAGTTGATTTTAATTGGTAAGCTCCAGGTCTCAATGTAATCCTTTCTCAAGAAGGAAGGTAGAGAGCAATTGAGAAAGATTGCCAACATACGGGTCTGACATCTCCCTGCAATTACACATACAGGTATACACATGAAGTACACAAACACACACAGATATAAGCACAAATAAATAAATAAATAGGAAAGCAACTCCATTTTACAAGGATTTTTAAATTGTTTTGTTTTGCTTGTTTGTTGTTTTTTGTGTTTTGTGAGTTTTTGTTTTGTTTTGTTTTTTGTTTTGCTGAGCATAAGTGAAGCACTGGGGTTGATCTTGAGCGGCTGGGGTTGATGGATGGTGGCTCAGCAGTTAAGAGCACTCACTGATCTTCCAGAAGACTTGGATTTGATTCCAGCACCCACATGGCAACTCATGACTGTCTGTAACCCCAGTCCCAGGGCATCTAAGGCTACTCGGCATAAGCGTGGTTCACAGACACATATGCAGACAAAACAGCTGTACACATTAGATAAGGAGTAAAATAGATAAATGAATAAATATTTTTAAAAAGAAATACATTTGGTAAACTAGACAGACGGTAATACATGCCTAAAACTCCAGAATTCAGGAGGCTAAAACAGGAAGATTAAAAGGTTTTAGCCAATCAGATCAATACAGTAAGACTTTGTCTCAACAATAGCAAGAATATAATTTAGTAAACTGTTGACATCGACCAACTAGTTACAATGTGTTCAGCATTACTATGCTGAGTGCTTTGTGTATACTTTCTCAGTTAATCCCTACAAGTCTGTATTATATTGTGCCCTTTTTATAGATAAGAATAGAAAACAGAAAAATAACCCCCACCCCTGCTAATTTCAACCAGCAAGTGAATGTCAGAGGCAGGACTTAAATCCAAGTCTGAATCAAGAGCCCATGTTTCTGACTCTCCCAATGTGAGGACTGTCCTGAGCAGGGCCTGAGCCCTGAGGTCATCCCTTCATACTATACTTGGAAACAAAGCCAAGTGTCCACTCAGTGGTGGGTAGTGAGGAGTTCCAGATAAAATAAGGTGTCATCTTGTGTGTTGCACTGGGCAGGGTCAGATAGAGAAGTCTTCCCCAAAGGATGATGCCTGAGCCAAGTTTGAAAGGAGGTGCTGTTGATAAAGAGAAAGAACATTCAGACAGTGGCACAGCCTAATCAGGAAAGAGCAAGCCATGCAGAGCCTGGCCTACACATCAGTGTGAGGAACCTGGAGATCTAGGTAGGGTAATTAGCCTCAAGGGCAGGCATGGCCAATCACAGAAGACCTGAAATATACTTCAGTTTCACCTTTCGATGACATGGTGTTTGTCTTAGTTAAAGCTTCTATTGCTGTAATAAATACCATGACCAAAAGCAACTGGGGGGGGGGAGGGGTTATTTCTGCTTATATGTCTCAATTATGGTTCATCACGAAGGGAAGTCAGGACAAGAACTCAAGGCAGGAACTGAAGAGAACACAGAGGAACACTGCCTTACTGGCTTCCTCAGTTTGCCTTCCTGGTGTTTGGGTTATTAGGCTAACCTTTAATGGCTGAACCATCTCTCCAGCCCTCAGTTTGCTTTCTTTATATACTTTTGAGCCACCTGCCAAAGCATGGCACCATCCATAGAGGTCTGGGCTCTTCCACATCAATCACTAATCAAGAAGATGCCAGAATTGCCTACCAGCTAATCTAACGAAGGCACTTTTCCAACTGACGTTCCCCCTGCCCAGATAGGTCCATGTTTGTGTTGAGTATACATATAACCAAGCGGGACAGTTATATTAGAGATTTAATCAAGAAGTGTCTGGGTCATATGTACTTGAGAACAATCTTCCTGCCTGTATTGGAGGAGGTGGGGCTACAGGCAAAAAGACTGGCTGAGAAGTTTTCAGTATATCACATAAGAGGTTCTGATATCCAGAGGCACTGGCTGGAGAGGAGATAACAGCATCTCAGAGGCAGGAGGAAGGGGTGACATTTGTTAAGAGCATGGGTCAGAATCTGCAAAGCAAAAGTGCTAGGGTACATTCAGCCATTTCTGATTCTGCCACTCACCTCCCAAATGTCCCTCACCTCTCTCAGTTAAACATCTCAGGAAGCAATCTCACAGACATAGTCAAAGGTTTGTCTCCTAGGTGATTCCAAATTCTGTCAAGTTGACAGTTGAGATTAACTGTGGCAGTTGTCCACAGAAAGCTGGACATGCATGAAATTGTCATATCTTCCCGTTCAAACCCTCATGTCATACTCTATAATCATCTACTCCACCTTGCTTCCTGTTTTAATGGATGCCCTCCTGGGGCATAGGCAGATGCACCTAGCTGAGACCTGTTTTTTCTTTCCAGTAGATGGAGCCTAGGCCCCCCATTCCTTACCTATGTGGCAGTAGATGGAGCCCAGACCCTCCATTCCTTACCTATGTGGCAGTAGATGGAGCCCAGACCCTCCATTCCTTACCTATGGTTGTGCCCTACTTCCCAGAGTTCTTTCTTTGTGAGACCATTGCTGACCTCACACGAACTATGATCTTACTCATGAAACAAACCACCCCTCCATTGACTTCTCCTTGCTTGTCCCATCATGCTCACAATAGATAGATAGACAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGGTTAGATAGATAGATGATAGATGATAGATGGATAGATAATGGATGGATAGATAAACAAATGATGGATAGATAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAATGGATAAATAGAAAGTGGATAGACAAATGATGGATGGATGAATTGATGGGTAGACAGATAGAGGATAGATGATAGATGATGATGGATAGACAGACAGATAGATGATGGGTGGATAGATGATGGATGGATGGACAAATAGATTGATGATAGAAGATAATGGATAGATAGATGAATGGATAGATAGACAAATGATGGATGGATAAATAGAAGATGGGTAGATGATGGATGGACAAATAGAGGATGATGGATAGATAGATTGATTGATAGATAATGGATGGATGGGAGAATAGAGGACGGATAAGTAAATAGATTGATAGATAATAGATGGAGGATAGGTGGATGGATAAATAGATAGATAGTGACTCCTCACTCCTCTATCTCTGTGGTGTATGTACCTTTCTCTGTCTCCTTAATATATATTTGAATTTATGACTGTTTTCTGGCACTACTAGCTAATATAAGCAATAAATAATAAAAGATAGACTAGGTATAAATAAACATAATTTTAACTGGTTTCCTCTTCAGATGTACTCAGTCCAAGTTGGCAAGATTCATTGTTGTTCGCACTGATGTAAATCCATTTCTAAATCAGACTTTTTATTTGTTGCTAATGCTTTGTGTGTGAGCTTCTGTCAGATCTGGTTGAATCATGACCGTTTGATGCATGATATGGCTTGATCAAGAGCTAGTGATAGTGGTAGGAGACATATTTACCCCAGCACGCTCCTGTCTTGCTCCAGTGCTTGTACCATTGGTAAACCTTCAGTGCAGATGGCCTCTCAAGAGTCTCCACAGCCTTTCTGTGATTTTATGATGGTTAATCACTTTGTTTGAAACTAGATATTATAATCAATTCTGATTATTTGCGTGGACTCGAACTCAGAGCTCCACCTGCTTCTACCTGTAGAATGCTGTAATTAAAGGCATGGGCCACTACCACCTGGCTAATTCTCTCTTCTTAAAGACTTTTCTTCCCCATAACTGTCTGATGACTCTTGGACAGGTGGGTCGTCTAAGAGATCAGTCTTACATTACATTGTAACCACTGGAGGCTTATTTCTTATTTAGTAGAGAGAAGTGAATATATAGAGATCTGAGAATGTTTCTTTTTCTTACACCTCTGAGTCACCTATAAACCCTCAAAGTGCAGTATCTGTCTCAGATCGCACAGGGAGCTTAGGTAGTGCCCTTCAAGGTCAGCCCTTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGCCAGACTCACTGTTTCCTCCTTCCCAACCAAACTTGCCCTTCCTCCCCTCAGCATTTAGCCCTTCTCTTTACACAGTGGCTCAAGCCAAAACTCTGGAGTCTTCCTGGCATCTCATCTGCTGTACCTCTTACCCCTCCATGGGTGGATCTTGTCAGCCTGCCTACAGGTAGGCTCCTCCATTGTTATTGTTGGGTTCCAAGCCACCCTCCTTTCCCCTGTTTGTCCTTGTAGGCTGAGCCTTCTTCTTCCCCTTCCTGCCCTCAATCTGTTCTCACACAGCAGCTGAAAGATGGCTTAAAGACAGAGATTCTGTCTGCTGCCTGCCTGTCCAGGCCCCTACACGTTGTAAAGCCTTTCCTTGCCATGGCCTACAGGACCCAACATGACCTGTCTTGCTTGTTATGTATTGCTTGGGTTTTGTTGTTGTTTGTTTGTTTGTTTGTTTATTGCTTGCTTTTCAGTGTTTCACTATGTAGCACAGGCTGGCCTGGAACCTACAATGCTCCTGCTTCAGCCTCTTAAAATACATCTCCAGTCATGCTGCCCCTTTCCCTCTGTTCCTGTGACACAGTCTTCTGCAGCTAGATGGTCTCAGTGGAAAACGGTTCCCCTCCTTCCATTTTAGTCCCCGCCCAGAGCCATCTTTCCTAGCCACCTTACTGAAACACATACATGCAGACACTGTTCCACTTAAAATGCTAAATGAAGAAGCAAATGATTCTTCCTGGGGACCACTGAAGGACGGGGCTGGCAAGGTGACTCAGTGGGTACAGGGGACTGCCACCAAGCCTAGCGATTTGAGTCTAATCCCTGGGACCCAGAGGTGAGAATTCCCACTAGTAGTCTTCTGACCTCCCCCAACACAAAATAAATAAAATGTAAAAAAGTTAAAATAAGAAGAAAGAAAGAAATCCCAAGGACAGGTGACAATATACAAAGAGGGCAAAGTGCGGCTTTTTGTGTGTGTGTGGGAATTTAAATTGAGGGCCAAAAAGTCACCCTGAAGGCAGTGAAATTTTGGCCCCACTTCACCAGGCATGAAAAGAACAGAACACACAGCTGGGTCCCCAGCAAGGGGGGTATCCAGCTGGGCTCATTTCTGGCCCTCAACCATGAGGATGTTTTCAGACAGCAACCCTGAGTGCACCCCCAAATCCTGCAAAGATGATGAAGAAGCAATCCCTCAGTCTGAGGAGCCGCTGTGCCCTGTTATCCTGGGGCACTGCTTTAAAGGGAGCTCAAACCTGGATCCTGAGACCACTGTGCTGCCCTGGGACTCTCTGGACTTGCCTCTGAGCTAGGACAAAGCAGCCACCCCAGGATACCTTGGGAATCCACATGGGCTGCCTGTGGCTCTCCTTCAGAAGTCAAGGCTCAATCCTGAAGACAACTGAGACTTGAGAGTGGGCCCTTTTATTAGGTTCACCCTCTTAGCAGCAGAGAGCCCATAGTGTTTGCCCACAGCCTGAAATACTCAAAGGCTAGGGCACTGAAAGGAGGGCAAGCCTTTAGGCCTCTTTGTCACCATTAATCCTGGTCCCTGCTGGTTTCTACCCCTTTGCATCAGAAAGGCTTTCTTGTATTTTCTTTCTTTCTTTCTTTTTCTCTTTTTTGAAGAGGAGGAGAAACAGCTGTGTGGGATTTGAGAATGGGGTTTTAATGGTCACTGACAGTACACAAAAGCTCTACTGTGGCGGTGAAGTGTTCTGGGGGCAATTGCCTCCTTTGTCTGAAGGCAGTGACACAAGCAGGCCACTCAAGAGGAAGAGAGAAGCAAGTGGGACATGTGATTGAGGTATCCCCCAGCACATGTGCACTTCGCTGTAACAGCAGTGTTCCCAGGCATCCATCATGACAGGCAGGGGCTCGCTCAGGTTTACCTTGTAAAAGAAGCAAGTTTCTCTGGAAGGTGTGTGGCATGAATGATTTCCTTAGGTCTTTCTGGAAAATTTGACTGGCAAAGTGCAGTTGTTTCTGTGAAGCAGGCAGGGTCTTCTTGGCCACAAGGCAGCCAATGTAGTTAAGAAATCCCAACCGATAAGGAATAATGTGAGGCCTCTCCGAGTGGAACCTTGACAAGGATTGGGAGTTGGGTAAATGGCTCTAAGGTGGAGCCACACCTGGACAATACTATGTCCATCCTATTCAGTGAGATGTAGGTCTAGACCTGAACATGGGCACCATGTTTTCTTCCAGAGGAGCCAGTGGTGTCAACCATGTTGATCTGTCTCTATGTAAGGATTGACTCTGCTGCTGGGACTACAGTTTTAGCCTGGGTCTCTGCCAACAGCTATTTCTTCAACAGGAAGGGCCCAGGCCAGAGGCCTTCTGGACAGGCTAGCATTGATTTGCTTTCTGCTAGTCTCCATGACAGCTTGGCTGAAGAAATCCATAAAAGAATTGTTCTTTTATTTACCAGCCCACTATAGATACAGAGATGGACTGCTGAGACAGCATGACACGTGACTGCTTTGTCTATAACTCAGTCCAGCTTTCCATGAAACATGGGCTAGAAGCAAAGTGGTGGTGGTAACTATATTGCAATGAGGTTGTCTAGAGAGTAAGTTTGAAATATAGACTCTGCCATGGGCAGATGTATCCTGGGAGTGCCAAGGAAGCAAGCTGGGTTCACATTTAAGATGTCAGTTAAAACAAAATCACAAACTTTTGGGGGGCTGGAAAGATGGCTCAGTGGTTAAAAGCACTGGCTGCTCTTTCAGAGGACTCAGGTTTGATTTATATCACCCACATGATTATAACAACCATTTGTAACTCCAGTTTCAGGGGATCTGACACTTTCTTTTGAACTTTGCAAGTATCAGGTGCACATATGGTGCATATACAGAGAGGCAAAACACCCATACACATAACATAAAAATAAATCTTTTTTTAAATCACAAACTCATATAAAAACAACCCACAAATATTATAAGAGAAAATAGGAACAATACAAAAAAAGTGTTACGATTTAAATATAAATGTAAATTTTATTGATTGAGTACATCTCTAACTGTAGAAATAATACCTAAAATAGTTTACAGCCTCATTCTGATCCAAAAGCCCCATGTTAAATCAGATTCTCCTTATGGATGCTTGAGAGGCATAGTAGCTGACTTTGCCCTGTGGTTTCTTTATTCTATTTCCTGGAAGATTTATGTTTAAAAGAGAATGTGTTTGTTCTAGTCAGCCTCTTAGCAGCTTAACAACATCCTGAATTGAGCTTCTGTCTCTACCTTTTTCTCTCCTAAATTCAGAGTTCAGGGTGCTAACCATTACACAAGGGAAAGCCCTCTCATAAGTTTAAAGCTCTAAACCTCTCCAAAGATCTATGCCACACATTGGCTGTAAGGCTTGGCCCACGAGATTTAGCTCCCTGTTCCTAGGTTCTCTTTTGTAAACTGGAGCCAGTGATGTCACCCGCTCTCCAGGGTTATGCTGCATAGAAAGGCTAGAAGGGGCTAGAAGGATGACATTTGACTGTTGAAATAGGAGGCCAAATTGGTTATATGTACTTCAGTTATGTGCCATAGAATAGGCATAAATCTTTATTTAACTAGTACCATCAGCAACTTTACTTAACCAGCAATCAGAAGCACACAGTCATGAATTTTCTTATTGCTTACTCTTTCTGAGTATTTACAAGGATTTTTGCATTTTATGGCATATCTTAAGTATGTTGTTTTATAAGAACCTCAAGTCCATACCAACCTCAGAGGCCAAAGGGGGAGCTTCAGAAAACACGACTTCTGATGGGATTCCTCCTTCCCGTGGCTTTTGCCCCCCTGAAGAATGAAAGTCCAATGTCTGGGATTCAGGAACTCCTTTGACCTATGCATCTCTCCTCTCTTCCTTTTGTTCCAATGTAAGAACCCAATGTAAGACTTGCCCCATTTCTACTGGGGAAGTCCTATCCAACCTTCAAGGCCTAACTCAAATATGGGTTTCTCTAGGAAGCCCTGCATGATGCTGCCAGGAAGAATTCAGAACATTTCTCTCAGGGCTGGAACTGTAGGTAGCTCCGTGGTCGACAGGCATGGGTGAGGTCCTAGACCCAATCTCTAATTCTTCTAGGTGAAATGCGTGTGCGCATGCACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAACTTTTACCTTTATATTCCTTCGATAGACCTGTAAACTAGGATAATCCATAAGTTAAAAAATAATTCACCATCAAGTGCTTCTGCTACAAACTAAGTAAGGGAGCTATGGTTCCTGCTGGCCGAGGGAGCTACAGACTTATTAGTCAGGGGCAATAGGAGTAGGGAACCCAGAGACAGCGCACACGCTGTCTTTAAGGGATTTGCGTGGGGAGTGTTTCCATGTGTCCATCTTCATCATAACACCTTCAACTCTAACACTCATATCCTCCCCCCTCAGCCTCTGCCTCCACACTGACCAGATTGTCCCCCCTTTGGCTAGTCAGTTGCAGGGCTGGGACGTATTATGATGGATCACAAGAGCGCTGCATTTTGTGTCCAAACGGAACCTTCCAAAATGAGGAAGGACAAGTCACTTGTGAACCATGCCCAAGACCAGAAAATCTTGGGTCCCTAAAAATCTCAGAAGCCTGGAATGTGTCTGACTGTGGAGGTAAGGATTCTGTGTGTCCCTTCTTACTCCTCCAGTCCCCAGTGTCGTTGTTTAGACTCAGGCAGGGGCGGCTCCCCATAGACACTGGATGATGCACACTGGACCTTGGTCTTCCCTCAAGCAGGAACCATGTTGGGTTCATTATTAGTTCTTCAGTGCTTGGTTGGCACCGGACACACTGGGCTGATGCCTACATGAACAAATGAAGGAAGATGGCGGCACAGCTCAGTTGGTAGAGTTTGCACTCCAGTACCACATTAACTGTTGTGATAGCAGACTTGGGAGGCTGAGGCAGGAAGATCAGGAGTTCAAGGTCATCTTTGACTACATAGTGAGCTTGGACTCAACCTGGGCTACATGAGACCTTGTCTCAAAATTAAAGACAAAAGGATAGAAGTAAGTATAAACATTACATTTACATGATTTCTTCACCCTGTAAATATGCACACCAGAGACCTCAGCCATCTCTCCATCTAAAGGGCCTGGTTCAACAAAACAAAACAAATCCAAACAAAACCCAAATTCACGACTCTGAAAGAGGGACCAGTAGTGATGACTGGGTATTAATAGGGGTGGAATGGGGAGAAAAGTGGATCAAAAGAAAGTAATTAGAATGCATTGGATACATGCTGATACAAAATTAATCAATAAAAAGGAATCAAAAATACAAAAATTCACAAATAAACAACAAGAGATGAGAATTGGGCAGGGTTTAAAGAGACACAGACTCTGTAGAGCATCTTGTTACTGGCAGGCTGTGTCATACAAGAACAGGAGCTTATAGGGGTCTTTCATTAATGTCTGATTCCTTACCTGATCTTGAGAGGGACCCTTTGACAACATGGGATAAGTTAGTTGGGTTTGGTAGACTGATTGGGGTATGCCAGGGCACAGCTCGGTGCAAGGAGATGCAACTGAAGAAATGATGAAATGGGAGACTCTTCAAGTCCGTTGATGCTGTTACTAGGCAAGGTTGGCCTGCTGTGTCTAATCATCAGATTGACTCCATAGCTGAAGTTGTTCCATTCCCCTCACTCCAGCCCCACCCTGATCCCATCCCTATCACAAGGGATCCCTGGGTAGGTCAAAGCTCCACACCAGGCTTTTCTCTTTGGAAGCAGAGGCCCATCTGTGCACTGGGCTCTGTAGGCCTGTGTGCAAACCTGAGGCATTACCCACCTCCTGAGGATCCAGGTGGGAATGGCTGCGTGCTTCTCACTGATGTGTAAGCTGAAGTCAGCATAGGGTATCAGGCCTCACAGAGGCCTATCTCTTGTGCAGAAAGGTGGGGGATGGCCATCCGTGGAGCCTCACTCACCCAGGGCCATACTCCCTGCAG
Seq C2 exon
GCCTTTGTCAGCCAGGTGAATATTCAGCAAATGGATTTGCCCCTTGCCAGCTCTGTGCCCTGGGCACCTTTCAGCCTGATGTGGGCCGTACATCTTGCCTCTCATGCGGAGGAGGTCTTCCCACCAAACATCTGGGAGCCACTTCCTTCCAGGATTGTGAAACCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-Scube2:NM_020052:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(11.7=10.0)
A:
NA
C2:
PF076998=GCC2_GCC3=PD(86.7=91.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: