BtaINT0129752 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44145818-44148462:+
Coord C1 exon
chr15:44145818-44145988
Coord A exon
chr15:44145989-44148294
Coord C2 exon
chr15:44148295-44148462
Length
2306 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TAGGGTCATTCCTCCCCCAGGTC
3' ss Score
8.56
Exon sequences
Seq C1 exon
TCAGTTGCAGGGCTGGGACATATTATGATGGAGCACAGGAACGCTGTATTTTATGTCCAAATGGAACCTTCCAAAATGAGGAAGGGCAAATTACATGCGAACCATGTCCAAGACCAGGAAGTCCTGGGACCCTGAAGACCCCAGAAGCTTGGAATGTGTCTGAATGTGGAG
Seq A exon
GTAAGAATTCTGTCTGTCCCTTCTTACTCCCCCAGTCTCTGAAATCATTGTTGAGACAGAAGGCATAAATAACATCTTAATGCAGAAAATGTGTACTACACCATGGAATTCCTACTGGTAGAAACTTTATTGGGCTCATCTTATTTGCTGAATAAATAAATGAAGACCTGATATAATACACTGGCAGAGAAAATGTGTATTTGTTGCAACTGCATGTTTCATCACTGTAAATAAATAACCTCTGAGACCTGAGTGATCAACCAGTGTGGAGCGATTCTCTGAAAATGTCAAAAAATGGAGAAAGTAGCTCTGATTATTTCAAGATTTCATCTCAAAGTCATAGCTTATTGCTTTTTTTCTTTAAATTGGAGGATAATTACTTTACAGTGTTGTGTTGGTTTCTGCCATATAACAACGTGAATCAGCCATAAGTATGCATATATCCCCTCCCCCTTGAACTTCCCTCCTACCTCCCACCCCATCCTGCCCCTCTAAGTCATCACAGAGCACCAAGTTGAGCTCCCTGAGTTATATAGCAACTTCCCACTAGCTGTTTTACATATGGTAATGTTTATGTTTCAATGCTACACTTTCTCCTTGCCCCACTGATTTTTTTAAAAGTGTCCATCTGGCTATTTTGTTAAAACTCCATGAAGAGTTTTTAATCATCTATAAAATATTAACTCTGGAGCCACGCTTACTTGGGTTCTATGGGCTTTTTTCCCTATTTTACTGTAAATGTCTTTATTAAACAGTAGAAGGGCCAGCTGTCCTGACACTCTGTGGGCTCAAATGGATGGTGTGATTTGATCTGGAAATTTTTAGGTGATGTCCAGGGCTGAGTGCACCAGGGCCCTGGCAGCCCTGCCTCTCTTTCTAGTGACCTCTGGGGCCAACTTTAGTTCCCACCTTAATGACTCCAAACTCAACTACAGGACCTTTTCTGATTTAAAAATCAGATCCTCAGACTGACTGACTGTGACTTCTAGCATAAACTTTGGCCGTGTTATGAAATCCTAAAACCAATGGTAAGATTGATAAGGAGGTACTTTGGGGGCATCTGTTCACACTTGTATGTGATCTCAATAATATACATATTTATAGTAAATAAGAACACTAGTAATAATAATTTATTGAATACTTACCTGTGTCAGGCATCATGTAGGCATTCATGGATAGTTCAGTGAATTACTCATGTGGTTGCTGTATCACTACAAAAACTTTATGAGGTTAAAGTGACTCATTCAAGGTCACACAGCCAAAGAGCAGAGGATTTAGAATCAGAACCCAGGTCTGACAGACTCCAGACTCCTCCCTCAGGTGTATTTGTTAAATACTGTTATATCTATAACTTATGGTTAGAAATAAAACTGTGAAAATTAATAGAGGAGAGAGGATTAGGAATATGAGACAACAGATTTCTTTTTATAGCATCTTGCTAGTGACGAGCTAATTCCTAAGTAAATATGTGCTTTTAGAAATACTTTTGTTTATGGCTGTAATTCTTGTCATAAACTAAAATAAATAAATAAGGTGTTTAAGGCTTCCCCGGTGGCACAGTGGTGAAGAATCCACCTGCCAGTGCAGGAGACACAGAAGACCTGGGTTCAGTCCCTTGTTTGGGAAGTCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATCCTTACCTAGAGAATCTCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCATGGGGCTGCAAAGAGTCGGACATGACTGAGCGACTGAGCATGCACACACACACACACACATGCACACAGGTGTTTAAATAAATGCCTCTGGGTCCCTCTGTTACTGTGGATGGGATTGGCTGTATTTAGTAGACTAAATGAGGGAGGCCAGGACTCCTCAATGTAAGGAGATGTAACTTAGTAAATAAAATTGGTAAAAACCGGTGGACCCTTCCATAACCAAGAGTCTTTTTATCCCAGGATGTAATCAGCTGGGTGACTGCAGGCAGAGAACCCTCTCTCTGGGGGCTCCAGCAGTGCAGTGGCTCCCTGGGCCCATGTAGTCCTCAGCCTGCAGCATATTCAGGCCTGCTCCATATTTCAGAAGAGTCAACACTTGTCTCCATCTTTGCCCTGTGGGTAAACATCAGGCACCCACAAGCCACTTCATCGGGGTCAGCCGAAGGGCAGGACAAGGCTTCTGCTTGCTGAGGTGGGAGCCGAGGTCAGCACAGGCGGACAGGCCTGACCACATCTCTCTGATCTCACTTGCAGAGAGGTGGGGCAGGCTCTCCCCGGGGGCCTTGCTCACCTAGGGTCATTCCTCCCCCAG
Seq C2 exon
GTCTGTGCCAACCAGGTGAATACTCTGCAGATGGCTTCACACCCTGCCAGCCTTGTGCCCGGGGCACATTCCAGCCTGAAGCCGGCCGCACTTCCTGCTTTCCCTGTGGAGGGGGCCTCCCCACCAAACACCCTGGAGCCACTTCCTTTCAGGACTGTGAAACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573:ENSBTAT00000027416:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075629=NCD3G=WD(100=72.4),PF076998=GCC2_GCC3=WD(100=87.9),PF075629=NCD3G=PU(13.0=10.3)
A:
NA
C2:
PF075629=NCD3G=PD(84.8=68.4),PF076998=GCC2_GCC3=WD(100=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development