RnoINT0131918 @ rn6
Intron Retention
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174438657-174454769:-
Coord C1 exon
chr1:174454563-174454769
Coord A exon
chr1:174438825-174454562
Coord C2 exon
chr1:174438657-174438824
Length
15738 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CAGGGCCATACTCCCCGCAGGCC
3' ss Score
8.15
Exon sequences
Seq C1 exon
CTTCCTGCAATCTGAGCTGCGTGGTGAAGCGAACAGAGAAGAGGCTGCGGAAAGCTGTGCGCACACTCAAGAAGGCTGCCCACAGGGAACAGTTTCACCTGCAGCTCTCAGGCACGGACCTCGATGTGGCTAAAAAGTTTCCCCGAGTGTCGGGACAGCAGGAGGAGACCTGTGGAGTGGGCCAGGGTCGTGAAGAAAGCCAGTGTG
Seq A exon
GTGAGTAGCCAAGGCGTGATTACTGACAGACCTGCCCGGAATGCCAGTGGAAGAGCTCGGCCATCCTGACTACTCTGGGCTCACTCCAGAGAATGCTCTGGATGCTTTTCCCTCATCTGTAGCTGTCCTATATTCACCAACCCTGGCACTCCCCAGGAGCTGAGGTGTGACTTACCTGACTTTTCCTCAGACCTGGCGGGTTTGCTGGCCTGTGGTAGGCAATGTCTGTAGAACTGAAGAACAGAAAAAAGGCAAGTGCAGTGCTATCTGGCTAGGGCAGGATGCAGGGCACCGGTGAGACTCTCTGCACTCACTGGTCACTCTCTGGTCACAGTCTCTGTAGTTACTTTTCTGCTACAGGTTGTGCAAAGGCAAAAACTAGAGGCCGCAGAGACACCTTGAGACACCTGGGCCTCAGGCCAAGACTCCAAGCAGCGTCAGTTCCATGGTGTATCGTTGCTCTGTGTATGTGTGTGTTTCAGAGCGAATATTGTTTCTAAATTCATCAGGAGGCTCCAGGACAAGAGACCCCAGGATGGTCAGACGTGACATTTGCTCTGTGTAGTTCCGAGAGAAACTGCCTGAAGAACTCACAGAGGGAAGTTGGAGTCTCCCTGTAGAGTGATAAGTGTGATTGACTTGGTTCTTAATCTGTTAGGAATGTATCAGTGCCCTAGCTCCTTAGATCTAGTGCTAGTCTTCCTGGGCAGGGACCAGCATCTGTCTCCTACAGGCAACAAAATGAATGCAGAGGCCCATGTTCTGGTCGCTTAAAATCTCATTGGTGGGAGATGCCTCGGGGCGGTAAATCGCGTGCCGTGCAAACCCAAGGGCCTGAATTTGACCTCTGGCACTCAAAGAAAGCTGGGCTTGGCCGTGCACACTTGTAATCCCACTACTGGAGAGGCAGAGACAGCATCACTGGGGCTTGCTAGCTGGCCAGCCTTGCCTATGGTCCTAGTGAGAGATCCTCTTTCTCAAAAACGAAGAAAAAGATGTCTGGATGTTATCTGGGGAGCGACAGTATAGTTGCCTTCTAGTTGGGTGAACACTCATGTACACCCCACAGTACCCGTGCATGCCCCCAAATGGTAGTAGTAGTAGCAGTAGATTTTTGTTTTAAGTTGAAATTTGTAGCCTAATTCCAAACTCTGCTTCACTCCTGTGTAAGGCTAGGTTCAGTAACCAGATTCTCTGAGAAGAAGCTGCTGTCTGTTCTTAAGGGTCAGTAGACTCGGGCCCAAGCGGTGGAGCTTAGGAAAGGGGGGAGGAAGTTGGCTGGTGTTTCTGCATGGGCACGACTGAAGCTAGCTTTGTTCTGGAGAACTTTCAGCGTGAGCCACTGCTCCAGTCTGCTGCTTCGCCAAAGCTCAGAGAAGATCTAGTGTAACTGTACACCAGGGGCCAGTTCCCAGAGAGTCTTGACTCTCGTTCCAGCAGATTTTCTTAAAAAAGAAGAGAGGGCAATAAACCCAGCTGGCTGGCTCTCATTTGGAGTCCTCAGAGTTCCAGTCTCCATACCAAATTAGTGACAAGAGCTGGCTCTTGCTGCCCTGCTTTCTAGGGTGAGCGGAGTGAGCTCTCGGACAGGCAGGCCGGCCCTCTTTCTGGTCTCTGGGAGCTGAATTGCAGCTCCTCCCTTTCCAGGCCTGTGGGGGTAAAGGCTTGTGGCTTCATGAAGGAAACTTTGTGGACAGTCAAGAGTTTAGGAAAACTAGTGTTAAAGCCTGTGGACCCTCAGGGATCATGTTAGCAGTACTGTTACGGGTGTTCTTCAGGGAAGCAAAGGCCCTAGAAGAGGAGAAGGCTTTACTAAGTGACGTGGGTCTCTTGGCCACGACCTATGATCACCCAGTACAGTTAAGTTCCTATGGTATTCGAATGTGTCCCTGAGATGCTTGTCAGCTAAATTTGGTTGGGTTTGTTTCTTTTTAATTTTTTTTTTAATTTTTTTTTGGGGGGGGTTGTTTCTTAGAGAGACAGTATGTTTCCCAAGAGCTTCTCCTAACTCTACATGAGTCTGGTGCCTAATATTGGGACAAAGTCAGCGACAACAGGGAAGACTTTCCCGGGGGAGGAACACAGCCCAGGAATTGTGAGTGAGGTGGGCTTAGGTGAAGAAGGGTCTGGAATACTGATTGAAAGGACTTGGGACACTGTGCGAAGGTTCAGCAGGTAAAGGCACTTGTAGCCAAGACCGGCCACCGAGTTCCTCGGATGCTCAGGGCGGGAGGAGAGAACTCCTGATCAATGAACTCTAGTTGGCATACAGTGGAGACAAGCCCGGGACAGGCCTTGGTTCATGTTAGACAGTATTTTCGGCTTCTGTTTATTGTTGTCCTTGTTACTAAAACACCGGAGGCTGGGAACCTTTACAAAGAAAGGTCTATTTTGGCTTATGTTTCTGTATATCAGTTGTAAAAGGGCCACGTCTCATGATGGCCTTCTTTTGGTCATACTCTCAAGGAGGCCATGGCCTCAGATGGTGAAGATGTGGGCTCACATGTGCTTCTGATTTTTTCCCCCCCTCTCTCTTTTCTCTCAGTGTCTTACTGTGTGGTCCTGGCTCCTTGAACTCATGGATTTAACTGATCTTTCTCCTCAGCCTCCTGAGTACCTGAAGTTATTCTCCCTATTCTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTCCAAGACAGGTTTTCACAGCTGTCCTGAAACTCACTCTGGAGATCAGGCTGGCCCTGAACTGAGATATCCCCCTGCCTCTGCCTCCTCAGTGCTGGGATTAAGGGAGTATGCCAACACGGCCTGGTTACCTTATTCTTATTCAGTATTTAGTCACATGGGTCCCATTCTTATGAATTCATATAATTCTAAAGATTTATTTATTTATTATATATAAGTACACTGTCACTGTCTTCAGACACACCAGAAGAGGACATCAGATCCTGTTACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCGAATTCATATAATTCTAATAATTTCTTCCTCAAGCCCACCTCTAAAGACCTTAGCTTAATTTTTTACCTTGTAAATACTTAATATTTAATGAAGATTGAATCTTTCGAACCATAGCAGAGCCCCAAGAGGTGTTTGGAATGACCTGAAAGGAGACTGACTGGAAACTTTGTGCTTCTCTTTTTAATTATAGATGTGGTAGAGATTTCAAATGGTACAGCAGTGTATAACAGTGAGCATTCTCCCCACTACTGCCTAATCCGACTTCTCAACACTGTTGAAATGGGCTGTTTTTATGCGCTTTTAAGCATATATAAAAGTAAGGTGCTATTTATTCACCAATACGCATTTATTAAGCTCCTGCTGTATACTAGGTGCCATTGTAGATACCGGGACTCCAGTAAAGGAGATGGACTAGCAAAAGTCTTAGCCCTCTTGACATTTATAATTTTAAAAGGAAGAAGCAGGTAGCTACTCCCTAAGCAAGGATACAGATTATTTGTCAAACGCTGACAAGGATATGGAGAACAAGTCACATGGGAAGTGAAATAGAAAGATCCCAGGCAAGGTGAGGAGCAGGGAGGGATTGCGTTTTCCACGATGTAGATGTGGCAGGGAAGGCCCCATTGCAAAGCGGGATGGTTCAGACACACACAGGAAAGAGGAATAAGAAGTAGAACAAAACCCCATAGGTATTAGAAGAAAGCACAGGGTGATGAGGGAGGGGAATATGGGAGGGGGGTTGTGACCTCAGGGCAGTAGCAGAGGCCCAGTTCACTCCAGGGTAGAAATCAGCGTGTTTTCCTACCCATGATTCTGGAGCTCAACCCAGGGCCTCACACAGTCCACACTGCCAGCCTGTATCTAAGATATCGGCATCTGTCAGCCTGGCCCCTGTGAGTAGACATTGACATGATTCCTGGCTTCCCTTTTACAAACAGAGCAGCTGTGGTTAGCTTTCTTTGTGCACATACTGATATTCTCGAAGGCTAGGTTTCTGGAAGTTCAACTGTCAAATCAAGATCATGCATATTAAACAGTGGTAGATATTGCCAACTTACCCTTCCAAATCCCCCCTCAATGCCTTCAGCACCACTTGAGTCCTTAATGTCCCACATCCTCAAGGACATGAAATAGTTATCATTGATCCTTTTAATCTTTGCAAACCCAGTAAGGAAAAAAATCACTAATTTTTTTGATCATCAAGAAAAATACACTGTCTTAAATTATTTATATTTCTTCTTCTAAGAACATTTATAGGTTTTGTCTATTTACATTAAATTGTAGTATAATATAAATAAAGTATTTATAAAATTAAAAATATTTTTTATATTTTAAAATTTGAAATATTTTATTAAACATTTAAATTATTCCATACAGAAGTCTATGTTTAGTTGCTTAAAATATCACTGGTGGGAGATACCTCTAATCAGAAAAATATATTAACCAGGCATAGTGGTGCACACCTTTAATCCCAGCACACAGGAGGCAGAGGCAGGCTGATCTCTGTCAGTTGAGGCCAGCCTGGTCTCCATAAATAGTTCCGAAATAGCCAGGGTTACATAGTGATAGCCTATCTTGAAACAAAACAGTAAATAAAAAATAAAGTAAAACTCAGGTCAGGCTAGACGATTCCATGAGTGAAGGAGGAGCTAGCCAGGATCTTGCCGCTAAACCTGATGATCTGAGTTCAGTCTCCAAGTCTATCAATGTCCCAAAGACAGAAGCCTCCACAAGTACTCCTCTATCCCCCATCCGCACTATTGCATACGTTTGTGCACACACGCTCATGTGCACACACTTACATAAAACAATTTAAACTTTTCTAAAAAAATAAAATGTAGAGTCCCAAGTTATAGCATAGGAAAGACTCACTTGACCAAATTGGGAAACTTTCTTCTTGTCATTTGTACATAGTAAAGTTTATGAATTTGGCATTTAGGGGCAGCCTGTTCTACAAGTAACCTTTGTACCATCTGTGATCAACTTCAGCAAGATGTCAGAAAAGAAAAGCAGTTCTGGGGCTGGGGACATGGCTCTGTCAGTAAAGTGCTTGCTGTGGGAGAATGAGGATCTGAGTTTGATGTCCTGCACCCACATAAGAAGCCATGCACCGTGACATTTGCTTGTAATCTCTGTGCTGGGAAACAGAATCAGGCCAGCCATGGGGGCGCACGGGCTGGCCAGTTGATTTTAATTGGTAAGCTCTAGGTCTCGGTGTGCAATCCTTTTCTCAACAAGGAAGGTAGAGAGCAATTGGAAAAGAGACCCAACATAGGCGTCTGACCTCTCCCTGCAACTATACACTCATGTATACACGTGAACATGTACACAAACAAACACACAGATATAAATACAAATAAACAAACCAACTCCATTCTACAAAGAACAGATCCTGGGCTAAAGCTGTATGTAACTCCTGGTAGAGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGAGCATAAGCGAAACCCTGGGGTTGATCATGAGGGGCTGGGATTGATGGAGAGGTGGCTCCGCAGTTACAAGCCGGATCTCCTAGAAGACGGGTTTGATCCCAGCACCCACATGGCCGCTCACAACTGTCTATAACCCCAGTCCCAGGGCACCTGAGATCATTAGGCATATACATGGTTCACAGACACAAATGCAGACAAAACAGCTGCACACACTAAATACATAATAAATAAATACATATTTAAAAAAGAAATACATTTGGCAAGACAGACATGGTGGTACATGCCTAAAACTCCAGAATTAGGAAGCGAAAGCAGGAAGATTAAAAGGTTTTAGCCAACCGGATCGATATAGCGAGACTGTCTGAACAATAGCAAGAATATAATTTAAGTAAACTGGTGACACTTATCAACTACTTTCAGTGTGTCAGCATTATTGTGCTAAGTGCTTTGTGTATATTTTCTCACCTAACCCCTACAAGTCTGTATTATATTGTGCCCTTTTTATAGATAAGAATAGAAGACATAGAAAAATAACCCCCACCCCCGCTAATTTCAAACAGCAAGTGAAATGTCAGAGGCAGGACTCAAATTCAAGTCTGAATCAAGAGCCTGTGTTTCTGACTCTCCCAGTGTGCGGACCTGAGCAGGGCCTGAGAGCCCTGAGATCATTCCTTCCTACCGTACCTGGAAACAGAGCCAAGTGTCCATTCTGCGCTGGGTAGTGAAGAGCTCCAGATAAAATGAGATGTCATATTGTGAGTTGCATAGGGCAGGGTCAGATAGAGAGGTGTTCCCCGAAGAGGGATGCCTAAGCCAAGTTTGGAAGGAGGTACTGTTGATGGTGGTCAAGGAAGAGCATTCAGGAACCTGGAGATCCATGTAGGGTAATTAGCTTCAAGGGCAGGCATGGCCACTCCCCGGAAGACCTGAAATGCACTGTAAGGAGCTTCAGTGTCGTTCGATGTCATGGTGTTTGTCTTAGTTTGGGTTTTTATTGCTATGATAAATACCACGACTAAAAGCAACTTGGGGAGGAAAGGGTTTTCTTCCATTTATATGTCTCATTCATGGTTCATCATGAGGGAAGTCAGGTCAAGAACTCAAGGCAGGAACCGAAGAGACCACAGAGGAACACTGGCTTAGTAGCTTGCTCAGTTTGCTTTCTTGGTTATTTGATTATTAGGCTAACCTTTAATGGCTGAACCATCTCTCCAGCCCTCAATTTACTTTTTTTATATACCCTTGGGCCACCTGCCCAAGCATGACATCCACAGTGGCCTGGACTCTTCCAAATCAATCACTAATTTAAAAAATGCCGGACTTGCCTACCAGCTAATCTAATGGAGGCATTTTTCCAACTGAAGTTCTCTTTTCCCAGGTAGGTCTACATTTGTGTCAAGTTGACAAAAAACCAAGCAGGACAGTTATATTAGAGATTTAATCAAGAAGTGTCTTGAGCATATGCATACTTGAGAAAAATCTTCCTGCCCGTATTGGAGGAGGTGGGGCTATAGGCAGAAAGATTGGCTGAGAAGTTTACTGCATATCACATAAGAGATACTGATATCACAGAGGCACAGATGGAAAGGAGAGCACAGAAGCTCAGAGGCACATTTAGGAGGAAGGGTGACATTTGTTAAGAGCATGGGTCAGAATATGCAAAGAGAAAGTGCTAGGATAGGTCCAGCCATTTCTGATCCTGCCACTCACCTCTCCCAGCTAAACATCTCAGGAAGCAACCTCACAGACATATTCAAAATTTGTCTCCTAGGTGATTCCAAATTCTGTCAAGTTGACAGTTGAGATTAAGTGTGGCAGGTGTTCGCAGACAGCTGGAAATGCATGAAAACTTCATATCTTCCCGTTCAAACTCTCCTGTCATATTCTGTAAACACCTACTCCACCTTACTTCCTGTTTTAATGGATGGCCTGTTGGGGCATAGGCAGATGTGCTTATCCATGGCCTGTTTTTCTTCTCTAGTACTGGATTCTACACCCTTCATTCCTTACCTATGTGGTTCTGCAGTGTGCCCTACTTCCCCAGAGTTCTCTTTCATTGCCAACCTCACACAAACTATGACCTTTCTCATGAAACAAACCACCCCTCCATTGACTTCTCCTTGCTTGTCCCATCATGCTCACAATAGATAGATAGACTGATGGATAAATGGATGGGTGGATAGATAGATAGATAATGGATGGATAGGTAGAGGATGGATAAGTAGATTGAAAGATGGAGGATAATGGGTGGGTAGATAGAGGATAGATGGATGGATGGATGGATGGATGGATGGATGGATAGATGGTAACTCCCTATTCCTCTCTCTCTGTGATATATTTATCTTTCTCTGTTTCCTCAATATATATTTGAATTTATGACTGTTGTCTGGTACTACCAGCTAGTATAAGCAATAAATAATAAAAGGTAGAATAAGACAAAGATTAAATAAGCATAAATAAACCTAATATAAAGAAACCTAGTTTCTTCTTCAGGTTACTCTGTCCAAGTTGGCAACGTTCATTGTTGTTTGCACTGATGTAAAGCCATTTCTAAAACAGACTTTTCATTTGTTGCTAATGCTCCTGTTGGATCTGGTTGAATCATGATTGTTTGACTCATGATATGACTTGATCAAGAGCAAGTGGTAGTGGTAGGAGACAGGCCTACTCCAGCACATTCCTGTCTTGCTCCAGTGCTTATGCCATTGGTAAACCTTCAGTGCAGATGGCCTCTCAAGAGTCATCCACAGCCTGTCTGTGATTTTATGGTGGTTAGTCACTGTTTGAAACTAGATATTATAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTTCCCAGCTCCGAAAAAAAGAAAAAGGAAAAAAAAAAGAAACTAGATATTATAATCAATTATGATTATTTGGCCAGATACAGTCAATCGTTTCCTTTACACCCCAGAGTTGTGGGATAGTTATAACTTTCTCTTCCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTCCTTCCTTCCTTTCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGTGTGTGTGGTTCAAGACAGGGTTTCTCTTTGTAGCCCTGGCTGTCCTACGACTCAGGCTGGACTTGAACTCAGAGATCCACCTACTTCTGCCTCCAGAGTGCTGTAATTAAAGGCATGGGACACTACCACTCAGCTGATTCTCTTTTCTTGAAGACCTTTCATCCCCCAACTATCTCATGACTCTTGGACAAGTAGGTTGACTAAGGGACCAGTCTTACATCACATTATAACCACTGGAGCCTTGTTTCTTATTTAGTAGGGAGAAATGAATATACAGAAATCTGAAATTTTTTTCTTACACTTCTGAGTCACCTAGTAAACCCTCGAAGTGCAATATCTGTTTCAGAGAGCACAGGGAGCTTAGGTAGTGTCCCTCAAGGTCAGTACTTGGATAGATGGATGGATAGATGGATGGATGGGTGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGAGGCCAGATTCACTGTTTCCTCCTTCCCAACCAAACCTTCCTTTCCTCCCCTCAGCATATAGCCCTTCTCTTTATACAGTGACTCAAGTCAAAACTCTGGAATCTTCCTGGCCATCTCCTATGCTGTAGCCCTCACCCCTCCACTGGTGAATCTTGTCTGCCTGCCTGCAGGTAGGCTCCTGAGCCCAGCTACTGTCACCTCCTCCATTCTTATTGTTTGGTTCCAAGCCACCCTTCTTTTCCATTTGTTCTTGAAGGCTGAATGTTCTTCCCCTTCCTGCCCTCAACCTGTTCTCACACAGCAGCCAAAAGATGGCTTAGAGACAGAGATTCTGTCTGCTGCCTGCCTGTCCAGGTCCTCTACACACTGTAAAGCCTTCTTTATCAGGGACTTCAAGACCCAACATGACCTGTCTGGCTTGTTGTGTATTGCTTGGTTTTTGTTGTTTTGTTGTTGTTGTTGTTGTTGTTTGCTTGCTTGCTTTTTGGTGTTTCACTATGTAGCACAGGCTGACCTGCAATTCTCCTGCTTCAGCCTCTTAAAATACATCTCCAGTCACCCTGCCCCTTTCCTTCTGTTCCTGTGACACAAGTCTTCTGCAGCTAGGTGGTCTCACTGGAAGACTGTTTCTCTCCTTCCATTTTAGTCCCTACCCAGAGCCATCTTTCCTAGCCACCCACTGAAGCACATACATGCAGACACTGTTACATTTAGAGTATTAAATGAAGAAGCAAATGATTCTTCCCAGGCACCACTGAAGGACGGGGCTGGCAAGATGACTCACTGGGTAAGGGCCTCCTACCAAGCCCTTTTGAGTCTAAACCCTGGAACCCACAGGTGAGAATTCCCACTAGTAGTCTTCTGACCTGTACCCCAATAAATATAATATAAAAGAGTTAAAATAAGAAGAAAGATATCCCAAGGACAAGTGACAATATGCAGAGAGGGCAAAATGCAGCTTTTGTGGGGGGAAATTTAAATTGAGGACCAAAGAGACGCCCTGAAGGAAGTCGAGTTTTGGCCCCACCTCACCAGGCAGGAAAAGAACATAACACACAGCTGGGTCCCCAGCGAGGGATGGGTCCAGCTGGGCTCATTTCTGTCCTCAATCATGAGGATGTTTTCAGACAGCAACCCTGAGTGCACCCCCAAATCCCGCAAAGACAGAGAAGAAGCAATCCCTCAGTCTAAGGAGCGGCTGTGCCCTGTTATCCTGGGGCACTCCTTTAAAGGGGGCTCAAACCTGGATCCTGAGACCACTGTGCTGCCTTGGGACTCTTGGGACTTGCCTCTGAGCTGGGACAAAGCAGCCGCCCCAGGATACCTTGGGAATCCACATGGGCTGCCTGTGGCTCTCCTTCAGAAGTCAAGGCTCAGTCCTGAAGACAACGTGAGGCCTGGAGAGTAGCCCCTTTTATTAGGTTCACCCTCTTAGCAGCAGAGAGACCATAGTGTTTGCCCATAGCCTGGAATACTCAAGCCTGAAAAGAGGGCAAGCCTTTAGGCCTCTTTGTCACCATTAATCCCGGTCCCTGCTGGTTTCTACCCCTTTGCATCAGAAAGGCTTTCTTGTATTTTTTTTCCTCTCTTTCTTTTTCTCTTTTTTGAAGAGGAGGAGAAACAGCTGTGCAGGATTTGAGAATGGGGTATTAATGGTCACTGACAGTACACAAAAGCTCTACTGTGACGGTGAAGTGTTCTGGGGGCAATTGCCTCCTTTGTCTGAGGGCAGTGACACAAGCAGGCCACTCAAGGGGAAGAGAGAAGCAACTGGGACATTCGATTGAGGTACCACCAGGCACATGTGCACTCCGCTGTTCCCAGGCATGCGTCAGGACAGCCCTGCTCACTCGGGTTTACCTCGTAAAAGAGCAAATGTATCTGGAAGGGGTGTGGCATGAATTGTTTCCTTAGGTCTTTCTCTCTGGAAATTTTGACTGGCAAAACTCGTTGTTTATGTGAAGCAGGCAGGGCCCTCTTGGCCATAGGGCAGCTGATGTAGCATTCATCCCTTTGATGGGTTAAGAAATCCCAACTGATACGGAGTAGTGTGAGGCCTCTCCAAGCGGAACCTTGACAAGGATTGGGAGTTGGGTAAATAGCTCCAAGGTGGAGCATACCTGGACAATTCTGTGTCCATTCTGTTCAGTGAGATGCAGGGCTAGACCTGAGCATGGACACCATGTTTTCTTCCAGAGGAACCAGTGATGCTAACTAACCATGCCGATCGATCTGCCTCTAGGTAAGGATTGACTCTGCCACTGGAACTATGGTTTTAACCTGGGTCTAGCCAACAGCCAACTTTCAATGGGAATGGCTCGGGCCAGAGTCCTTCTGGGCAGGCTAGCATTGATTTGCTTTCTGCTAGTCTCCATGACAGCTTGGCTGAAGAAATCCAGAAAAGAATTGTTCTCTTACTCACCAGGTCACAATAGATACTGGGGTGGACAGCTGAGACAGCATGACACACAAATGCTTTGTCTCTATATAACTGAGCCCCGCCTTTCATGAGACATGGGCTAGGGTTGTGAAAGCAGAGGGTATTGCAATGAGGCTGTATGTAGGAAGTAAGTTTGAAATACAGCCTCTGCCACAGACAGATGTATCTTACCCATTATAATACGAGTGCCAAGGAAGCAAGGTAGGTTCGCATTTAAGATTTCAGTTAAAACAAAATCGGGGTTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAAAAAAAAAACCAAAAAAACAAAATCACAAACTTTTGGGAGGACTAGAAAGATGGCTCAGTGGTTAAGAGCACTGGGTCCTCTTTCAGAAGACCCAGGTTTGATTTATATCACCCGCATGGTTGTAACAACCATTTATAACTCCAGTTTCAGGGGATCTGACACTTGCTTTTGGACTTTACAAGTATCAGGTGCACATACATAGAAGCGAAACACCCATATACATAAAATAAAACATTTTTAAAACATCACAAACTCATATAAAAACAACCTACAAATATTATAAGAGAAAATACGAACAATACAAAAAAGTGTTAAATTTAAATATAAATTTTATTGCTTGAGTACATCTATAACTGTAAAATAGTCCATGGCCTCATTCTGATCCAAAAGCCTCATTTTTAGTCATAATTTGAGAGAATAATGAAAAGTGAGTAGTAAAGAATTTTTGTTGTTTTTGTTGGTTTGTGTTTGAGAGTAGACTTTACTGTGTAGGTCTTGAACTTGCTGTGTAAGGCCAGGATGGCCTTGAACTCAGGGAGATCTATCTGTCTCTGCCTCCTGAGAGTCAGGATTAAAGGTGCGTGCTATCATACCCAGCAATGAATGTTTTGATTACTGAACAGATCATCCGCCATGTTTAACCCTACACTTATACATATGACCTGCACACATGCGAACTGCACTCGGAGGATAGGGTGGAAATGAACATTCTTCGTATGGACACTTGAGATGCATAATAGTTGACTCTGAACTGTGGGATGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGACGATGATTATTATTATTATTATATTTCCTGGAAGATTTACGTTTAAAAGAGAATGTGTTTGTTCTAGTCAGACTCTTAGCTGCTTAGCAACACCCTGAATTGAGCTTCTGTCTCTACTGTTTCCTCTGCTATATTCAGAGTTCAGGGCACTAACCATTACACAAGGGAAAGCCCTCTCTTTTCAAAGCTCTAAATCTCTCCAAAGATCTATCTTACACATTAGCTGTGAAGCTTTGGACCACGATATTTGGACCACCCTCTTCCTAGGCTCTCTTTTGTAAGGTGTAGCCAGTGATGTCACCTGCTTTCCAGGGTTATGCTAAGGAATGCATGACATGTTACAGGTAACACGTTGTCTGGCTTGGTGTTATGTTACTGTATGTACTTAATGACAGCTACATGATGTTTGACTGTTGAAATAGCAAGCCAAATTGGTTATATTTGCTTCATTTACATGTCATAGAATAGGGCATAAATCCCTATTTAACTAGTACCTCAGAATCTTTATTTAACCACCAATCAGAAGCACAGTCATGAATTTTCTTATTGCTTATTCTTTCTGGAATATTTACAAAGATCTATGCATTTTATGGCATATCTGAAGTATGTTGTTGTTGTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCATTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTGAAGTATGTTGTTTTATAAGAACCTTAAGACCTTACTGACCTCAGAGGCCAAAATGGGAGCTTCAGAAACATGACTTCTGATGGGATTCCTCATTCCAGTGGTTCCCCCTCTCCCCAAGGATAAATTCCAGTGTCTGGAATTCAGGAACTCCTTTGACCTATCCAGCTCTCTCTCTTCCTTTTGTTCCAATGTAAGAACCCCTGTGACTTGCCCCATTTCTACTGGGGAAATCCTCTCTAACCTTCAATGTCTAATTCAAATATGGCTTCCTGTAGGAAGCCTTGCAGGATCCTGCCAGGAAGAATTCAGAACATCTCCCTCAGGGCTGGACCTGTAGGTAGCTTTGTTTGACTGGCATGCGTGAGGCCCTAGACGCAGTCCCTAATTCTTCCAGGTGACACACACAGACACACAGACACAGACACACAGACACACACACAGACACACAGACACACACACACACACACACAGAGACACAGAGACAGAGAGAGAGACAGAGAGAGACAAAGAGACAGAGACAGAGAGAGACAGAGAGAGAGAATGAGCAACTTTCACCTTTATACTCCTTTGATAACCCTGTAAATTAGGATAATCCAGAAGTTAAAACAAACAAAAAACAACAATAATAACAACAACAACAAAAAAACCCAAACCCACCATTTCACCATCAAGTGCTTTTGCTACAAACTAAGTAAGGTAGCCATGGTTCCTGCTAGTGTAGGGAGATACAGACCTATTAGACAGAGTCAATAGGAATAGGGAACCCAGAGACAGTGCCCAGTCTATCTTCAAGGGATTTGCATGGGGAGTGCGTCCATGTGTCCATTTTCATCTTAACACCTTCATCTCTAACACTCACTTCATCATCCTCCTCGGCCTCTGTCTCCACACTGACCCGCTTTGGCTAGTCAGTTGCAGGGCTGGGACGTATTATGATGGATCACAAGAACGCTGCATTTTATGTCCAAACTGAACCTTCCAAAATGAGGAAGGACAAGTCACTTGTGAACCATGCCCAAGACCAGAAAATCTTGGGTCCCTAAAAGTCTCAGAAGCCTGGAATGTATCTGACTGTGGAGGTAAGGATTCTGTCTGTCCCTTCTTACTCCTCCAGTCCCAGTGTCATTGTTTAGACTGAGGTGGGGTGGCACCCCAAAGACACTGGAAGATGTACACTGGACCTTGGTCTTCCCTTTAGCAGGGACCACGTTGGGTTGGTTCATTATTAGTTCTTTAGTGCTTGGGTTGGCACCAGACACACTGGGCTGATGCCCACATGAGCTAATAAAGGAAGATGGCGGCACAGCTCAGTTGGTAGAGTTTGCGCTCCAGCACTGTAATAGCAGACGCTGTGATCTCAGTACCTGGGAGGCGGAGGCAGGAAGATCAGGAGTTCAAGGTCATCTTTGACTAAGTAGTGAGCTTGGGGTCTACCTGGGCTACACGAGACCCTGTCTCAAAAATAAAGACAAAAGGATGGAGAAGATACTGACAGACCAGTGTAAACGTTATATTTATAAGCTTTCTTCACCCTGTAAACATGCACACCGGAGACCTCAGCCATCTCTCTGTCTCAACGGCCTGGTTAGACCAAACCAAACGCAAATTCACGAGTCTAAAAGAGGAACCAGTATTAATAAGAGTGGAATAGAAAGAAAAGTGGATCAAAAGAAAGTAATTAGAATACGTTAGATACATGCTGTCACAAAACTAATCAATAAAAAGGGAATCAAAATATAAAATTCACAAATAAAAAATGAGAATTGGGTTTTACAAGACACAGACTCTGTAGAGCTCCTTGTTACTGACAAGCTGCGTCCTACAAGAACAAGAGCTTCTAGGGGTCTTTCACTGATGTCTGATTCCTTCCCTGATCTCCAGAGGGACGCTCTGACAACCTGGGGCAAGTTAGTTGGATTTGGTAGGCTGATTGGGATCCTCCAGGGCACAGCTCAGCGTAGGAAGACACAACTGAAGAAATGATGAAATGGGAGACTCTTCTAGTCCGTTCATGCTGTTATAGGAGGGGTTGGCCTTCCATGTCTAATCATCAGATTGACTCTATGGCTGAAATTGTCCCCTCACTCTAGTCCCTGGGTAGGGGCAGGTCAAAGCTCCACACCAGGTTTTTCCCACTCGAAGCAGAGACCCATCTGTGCACGAGGCTCTGTAGGTCTGTGTGCAAACCTCAGGCACTTACCCATCTCCTGAGGATCCAGGTGGGAATGGCTGGTTGCTTCTCACTGAGCTGAAGTCATTGCGGGGTATCAGGCCTCATGAAGGTCTATGTCTTGTGCAGAGAGGTGGGAATGGCCTCCCATGGAGCTTCCCTCACCCAGGGCCATACTCCCCGCAG
Seq C2 exon
GCCTTTGTCAGCCGGGTGAATATTCAGCAGATGGATTTGCCCCTTGCCAGCCCTGTGCCCTGGGCACCTTTCAGCCTGATGTGGGCCGTACATCTTGCCTCCCGTGTGGAGGAGGTCTTCCTACTAAGCATCTGGGAGCCACTTCCTTCCATGATTGTGAAACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123:ENSRNOT00000052377:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(10.2=8.6)
A:
NA
C2:
PF076998=GCC2_GCC3=PD(88.1=91.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]