MmuINT0141555 @ mm10
Intron Retention
Gene
ENSMUSG00000001833 | Sept7
Description
septin 7 [Source:MGI Symbol;Acc:MGI:1335094]
Coordinates
chr9:25301412-25303852:+
Coord C1 exon
chr9:25301412-25301537
Coord A exon
chr9:25301538-25303716
Coord C2 exon
chr9:25303717-25303852
Length
2179 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
TTCCTAAATGTTGGTGGTAGGAG
3' ss Score
2.68
Exon sequences
Seq C1 exon
AACACATATGCAGGACTTGAAAGATGTTACCAATAACGTACACTATGAGAACTACAGAAGCAGAAAGCTAGCAGCAGTGACTTACAATGGAGTGGATAACAACAAGAACAAAGGGCAGCTTACCAA
Seq A exon
GTACGTATATAACTTTCTCCAGGAAAAAAAAAAAACACTAAATATTTCATTTCCTTTCTTGAAGTTCTTCTTACTTATTAGAATATTTGGACCACGATTCTCTATAAGAGGAGAAAATTGTGCAGTTAAAATTTGTCTTGGTAGTGTTTTTATGCCTTACCGTTAATTGTTACTTGTTGGGAAGATTATATAGTTCTGTTCTTTAAGTACTATATATGTTTTTGTCTTTTGCCAATCATTTTTATAATTCATACAGCACACAGCTAAACAGATAAATATAGTTTTGAAGAGAAAGTTATAAACAACTTCTTGGTCTGGCAAGATGGCTCAGTTGGTAAGGGCACCTGGGGTGCATTTTGTTCTGTGCTGGAGTTTTTATTATTGTAACCTGGGGGTCATAATTGGATTTGATTGGTGACTTTTCTCCTGGTGGCATGCATATCAGCCTAGTGTAGATTAAACTTCCAGTTGAGTAACAGCTAGATTTTTCTGTGTTCTTTGATTCAAGTTTGTAATGTCTTCATCAGTAGGATCTTACTATGAAATCTGGAGGGTAACTAACGTTGGCATTGTCCTGTAATTTGTATGCTTAGGGGACTTTTATGGGGTCCCATTTGCTAACAACTCAAAAGGGGGCAATCCAATCCTGATACTGGGGTGGCTATTTGGTAACATATGATGTCTGCTTGGAGTATTGCCCTCAATTATAAGGTAACTTCATTTAACAACCTTTTATATGTGTATATTTTAGAAAGCATCTACAGTAGTACATTTTTGTATGGCTTTTTCACAACTCCTTTAGTGTTAGTTATCGTTCCTTGTACTTTCTTCCTGCACTCCCCTACCATACCCCTGTTTCTCACTCCTGCAGGGTTATTCTTCCTTTCTCCCTTTATTACATTGTATTTTATTTCCCCTTCTTTGAAAAATCTCTGTGAACTTTTAATGCCCAGAGACTAAACTAATTTTTGTTTAATTCTTTAATGTCTATCCTAGCATTTCAGGAACACTTTAACTTACTGAAAATGTTTAAACTTAAGACACTAAAATATTTAAGTGAATGGATTTTCATCAGCATTGAAGTTATAAAGAACATAAAAGTAGTCTGCATAACCTAACTGGTGCTTAGGTATTAGATGGTGGTTGTCTTCAACATTTCAGTTGCGTTGCATAAATAAATTATAATAAATGTAGTTGTGACATGAGTAGATATCTTGGAGGTTGTAATACTTGGAATTTTACTAAAACTAAGCATGTTCTCTACATACTGACTTTATTAGCTATGCTAGTTTTTTCTCCCACTCAATTTTTTTCTTTAAGGAAAATAAATCATGTGACTTTCTGTAGTTTTCTGTGGCGGTATTTTGGGACTGTTCCTTTTTGGTTTTCCTTGTACAGTTTATTTCAAATATAACATTGTCTTAGTTCTGGTTTCTGTTGCTATGATAAAACACCATGACCAAAAGCAACGTGGGGAGGAAAGGATTTATTACTATCATAATACAGTTTATCATTGAGGAAATCAGGGCAGGCACTCAAAACAAGGCAGGAACCTTAAGGCAAGAGTGGATTCAGAGGCCAGGGAGGAGTGCTGCTTACTGGCTCACTCCTATGGTTTTCTCAGTATGCCATCTTACATAAACCAGAACCAACAGTCTAGGGTGGCACTACCCACAGTGAGCTGGGCTCCTCCCATCAACCACTAATTAAGAAAATGAGCGACAGTCTTACCTACAGTCTAATCTTATGGAGGCTTTTCTCAATTCATGTCTCCTACTCTCAGCTGGCTTTAGCTTGTGTCAAGTTACTTAAAAACTAGCCAGAACATTCATCTTTAGAATTAAGGTACACAAGATTTAGAGAAACAGCTTCGCAACAGTTTTATTCTTAGGCTTTACTTCATAGTAATCATTTGAGATTGAGATTTAAATAAATATTAGTGGAGAGGGTGTTAACTTCTATAGTTATGAGCATATTTATACATTTTACAGTTTCTGAAGGATTCTTCACCCATATGTATAAGACTTGGAATTTGTGTCTAAAATGATGTAAATATTTGTATGCATCCAAATGATAATGGCACATGTAGCATCTCATTGTTCCCATCAGCTCATTGACAATTTAGTATTGCAGTTTTGACTTACAGACCTTAATGATTATTCCTAAATGTTGGTGGTAG
Seq C2 exon
GAGCCCTCTGGCACAGATGGAAGAAGAAAGAAGGGAACATGTAGCCAAAATGAAGAAGATGGAGATGGAGATGGAACAGGTGTTTGAGATGAAGGTCAAAGAAAAAGTTCAAAAACTGAAGGACTCTGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001833:ENSMUST00000165594:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=0.652
Domain overlap (PFAM):
C1:
PF0073513=Septin=PD(11.6=74.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types