MmuINT0145581 @ mm9
Intron Retention
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32275825-32276910:-
Coord C1 exon
chr2:32276823-32276910
Coord A exon
chr2:32275937-32276822
Coord C2 exon
chr2:32275825-32275936
Length
886 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GACCATGCTTCTGCTTACAGCAT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
Seq A exon
GTGAGTGAGTGTGGTGAGCTTTGTTCTAGGGGATGCTTTAATGGCTTTTGGACTAATTTGTGTGCTGTTCACTCTTGGCCTGCATCCCTGAAGCTGGCCCTGTGTTTAGGAGGAGGGATAAGAAGCCCCTTCCCATAGTAAGCTTCTCCTGAGGTTGCAGCCCTACTCTCACAGAAGAGTCATAAATCTGGAATTAACCCAATGCCTGCAACCTTTAAAATGATAAGATTAGTTGTGGGCATTTCTCGTTAGTGAGAAGTGTCCCTGAATATTCTCTGCCTGATGGGGAGGGACATGTGTGGTCCTTAACTTAGGTTCTGCTATAGCTTGTTCTTTCCTCTGTAGCCACATATGCTGGCCAGAAAGATGGCTCACTCATGAGCAGAGGGCTGCCGGAAAGCCCTGCAAGTAGAGAACAGTTTGTACCTGGCTGGCCTGAAAGCCGCCTGGTCACAGGGACAGCAACCCCAGGAGCCCAGTCCTGCCCACTTCCTCGTGCTGTGCTGGCCCCTGGTGTCTTTGGGTGTGTGCTTGCTTTACTAACCTGCTCAGCGCATTTATTTGTGTTGTTTCTCCTTTCTCCTTTGCATCCTCCTTTGTCTGTCTGTCAGAATACGGACGGGCCACTTCTGGGGCCCTGTCACCTAGTAAGTATCTGTGTTTTCCCGTGATTCCCTCCCTCCCTGATCAGAATGGGGTTCCTGTGGGCCAGCACATCTCCATTTTATGGAAAATGGGGTATGGAGCCACCTTACTCTTTCTCATGGGCAAGGTGCCTTTGGTGTCCTGGGTGGCTATGGCACCTGCCTCCATCCCATCTAAGTGGTAGGGCACACAACTGGCAGGTGGGTGTGACACGTGCGACTGACCATGCTTCTGCTTACAG
Seq C2 exon
CATGGATAAGAATGGCACGATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCGGAGATCATCCTGTACTGGAAGCACTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-Slc25a25:NM_001164357:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(38.7=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(24.0=47.4)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGAATCGATGCTCAGGAGA
R:
CGTCGAGTGCTTCCAGTACAG
Band lengths:
200-1086
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: