BtaINT0134639 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98753223-98754413:+
Coord C1 exon
chr11:98753223-98753310
Coord A exon
chr11:98753311-98754301
Coord C2 exon
chr11:98754302-98754413
Length
991 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCGGGCATGTGTCTTACAGCAT
3' ss Score
7.76
Exon sequences
Seq C1 exon
GGCGGATCGACGCCCAGGAGATCATGCAGTCCCTGCGGGACCTGGGGGTCAAGATATCTGAGCAGCAGGCAGAAAAAATCCTCAAGAG
Seq A exon
GTGAGTGCGTGCGTAACCAGTCCCTTGGTTTGCTTTAACAAAAGTGTGACGAAAGGAAGATTCTTGGACTTGCTCCACAGTGCCATTCATTGTATTAACCCTGTTTCCATGAACTTTGGCTCCTGGTGGTTGGAAGGGATGAATAAGTAACCCCTCCCAGAGACTAGCCACTCCCCAGGGTCCAGGTCAGCTCCCAGTGGAAGAATCACAAATCCCCGGGCAGGGTGCCCAACGCCAGCTACTCTCGAAGAGAAAAGACTAGTGGGGAGATTTCAGTAGGTGAAAGGCGAGCAAGGAATACTCTTCTCTGCCTGGTCGTGCAGGGAGGGGCAGGGCTCACAGGGCCGCCCTCCAGTGAGGGGAACTTCCTCTTAACTTCAAGCTCAGATGCACTGCCCCGAAAGTCAGCCCCAGGCAAATGGTGATCCTCGGGGCTGGGAACTCCCACCAGAGCAGCCCCGCAGTCGCTTCCTGTCCTCCCCACCCTCCTTAAGTCCTGGGGGGCCCAAAGCCAGCTGGCAGGCAGGTAGGGATGGCGGCCCCTGGCCCTCGCTCCCCTCACCTGCGGAGCGCCTCCTCACGCCATGCTGTGCTGTGTGCTTGCCTCACTAACCTCCGCTCAGAGCACTTATTGGTGGTGTTTTTCCTCTCTCCTCTGCATCCTCCTTTTGTCTGTCTGTCAGAATACGAATGGGCCACTTCTGGGGCCCTGTCACCTAGTAAGTATCCGTGTCACCCTGGGGACCTCTTCCTGCCTCCTTAACTTCTGTGCCTGATCAGATCGGGGTGCTCGTGGGCCATTACATCCCCATGTCTGTGCCAAGTGGGGTGTGGAGCCACCTGGCCCCTTCTCCTCCAGGGCAGGGGCACCTTCCGTGGTCTCCTGGTGGCCACGCGCCTGCCCTCGGCTCCCCTGGAGGTCGGTGGGGGTGGGTTGTGGCTGACAGATGGGGCCTGCGTCCACGTGGGTGACCGGGCATGTGTCTTACAG
Seq C2 exon
CATGGACAAAAATGGCACGATGACCATCGACTGGAACGAGTGGCGAGACTATCACCTCCTGCACCCCGTGGAGAACATCCCTGAGATCATCCTCTACTGGAAGCACTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912:ENSBTAT00000015802:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGACGCCCAGGAGATCAT
R:
GGAGTGCTTCCAGTAGAGGATG
Band lengths:
193-1184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development