RnoINT0136931 @ rn6
Intron Retention
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11448232-11449315:-
Coord C1 exon
chr3:11449228-11449315
Coord A exon
chr3:11448344-11449227
Coord C2 exon
chr3:11448232-11448343
Length
884 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GACCATGCTTCTGCTTCCAGCAT
3' ss Score
7.14
Exon sequences
Seq C1 exon
GGCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGATCTGGGTGTCAAGATCTCTGAACAGCAGGCGGAGAAGATTCTTAAGAG
Seq A exon
GTGAGGAGTGTGGCTGAGTTCTGTCCTATGGGAGGCTTTAACGGCTTTTGGACTAATCCAGCACTATTCAGTGTTGCCTTGCTTCCCTGAAACTGGCCCTGTGTTTAGAAAGAGGGATAAGAAGCCCTTTCCCAAAGCAAGCTTCTCCTGAGGCTGCGGCCCTACTCTCATGGAAGAGTCCTAAATCTAGAATTAGCCTGTTGCCAGCAACCCTTAAAATGACAAGATTAGTTGTGGGCATTTCACATTGGTGAGAAGTGTCCCCGGAACTCTTTCTCTGCCCCTGGGGAGGGACTTGTACCATGTGTGGTCCTGGACTTGGGTTGCTGTAGTAGCTTGTTCTTTACTCTGAGCCACATATGCTGGCCGGAGAAACAGCTCCCTTGTAAGCACAGGGCTGCTGGAAAGCCATGCAAATAGAACAGTTTGTGCCTGGCTGGGTTGACAGCCAGCTGGTCACAGGGACAGCAGCCCCAGGAGCCCATTTCCGCCCACTTCCTCAAGCTGTGCTGACCCCTGCTGTTGGGTGTGTGCTTGCTTCACTAACCTGCTAAGCGCATTCATTTGTGTTGTTTCTCCTTTCTCCTCTGCATCCTCCTTTGTCTGTCTGTCAGAATACGGACGGGCCACTTCTGGGGCCCTGTCACCTAGTAAGTATCTGTGTCTCCCAGTGATTGCCTCCCTCCCTGATCAGAATGGGGTTCCTGTGGGCCAGCACATCTCCATTTTGTGAAAAATGGGGTATAAGCCACCTTACCCTTTCCCATGGGCAAGGTGCCTTTGGTCTCCTGGGTGGCTGTGGCACCTGCCTTCATCCCAGCCAGGTGGTGGGGCACACAGCTGGCAGATGTGACACGTGTGAGTGACCATGCTTCTGCTTCCAG
Seq C2 exon
CATGGATAAGAATGGGACAATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCTGAGATCATCCTGTACTGGAAGCACTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338:ENSRNOT00000020206:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAATCGATGCTCAGGAGAT
R:
CGTCGAGTGCTTCCAGTACAG
Band lengths:
199-1083
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]