HsaINT0151758 @ hg19
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663]
Coordinates
chr9:130863588-130864760:+
Coord C1 exon
chr9:130863588-130863675
Coord A exon
chr9:130863676-130864648
Coord C2 exon
chr9:130864649-130864760
Length
973 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCCTCGCCTCTGTCTTGCAGCAT
3' ss Score
9.5
Exon sequences
Seq C1 exon
GACGCATTGACGCGCAGGAGATCATGCAGTCCCTGCGGGACTTGGGAGTCAAGATATCTGAACAGCAGGCAGAAAAAATTCTCAAGAG
Seq A exon
GTGAGTGCTCAGCCAGCCTCTGTGTTTGGTTTAAGTGTGATGAAGGGAAGGCTCTGAGACTAACCCTCCGATGCCATTCCCTGGGCTGACCCTGAACTTGGCCTTCTCGTGGTTTGAAAGGATGAATAAGTAACCCCTGTGGGAGGCCAGCCCCTCCCCAGGGTTGCAGGCCTGCTTTCATTGGAAGAATCACAGATCACCTGGAATTTTGCCCATCGGCCAGTGGCCCATGAAGGGAAAACTAATTTGGGGGTGGTTCAAATAGGTAAAAGGCCAGCAAGGAGCACCTGTGCGTGTGGAGGGGGCGGGGCGGGGCGGGGGGCTCACACTGCAGCCTCGTTCCCAGGTGAATTTCTTCCCCATGCTGGTAACTTGCACTTAACACTTTAGTCAGAGGCGCTGCCCCAAAAGATAGCTCCCTGGTGCGGGGCGGCTGCCAGGAAATCTCATGGAACAGCCCTGGGAGTTGCCGTCTGTCCTGGCTGGACCTTCCGGAAACCCTGCGGTCTGAACACTGGCTGGTCCTCGGGGACAGCAGCCCTGGGCTCAGCTGCTGTGGCGGGCTCGTCTCGTGCCGTGCTGTGCCCCTGTCTCTGGGTGTGTGCTTGCTTCACTAACATGGCTCCGAGCACTTATGCGTGTTGTTTCTGCTCTCTCCTCCGCATCCTTTGTCTGTCTGTCAGAATACGAACGGGCCATTTCTGGGGCCCTGTCACCTAGTAAGTATCCATGTCGCTCATGACTGCCTCCCTTGACTTCCATGCCTGATCAGAGCGGGATTCTTGTGGGCCATTATATTGCCATTGTTGTGCTAAGTGGGGTGTGGAGCCCCCTGCTCTTTCTCCTGGGGGCAGAGGCACCTCGTGTGGTTTCTGGGCATCCGAATGCCTGCCCTTGGCTCACTGGGAGGTGGGGGGATGCAGCTGGCGGATGGGCATGTGGGCACGTGGGCAGCCTCGCCTCTGTCTTGCAG
Seq C2 exon
CATGGATAAAAACGGCACGATGACCATTGACTGGAACGAGTGGAGAGACTACCACCTCCTCCACCCCGTGGAAAACATCCCCGAGATCATCCTCTACTGGAAGCATTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339-SLC25A25:NM_001006643:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(28.0=31.8)
A:
NA
C2:
PF0003627=EF-hand_1=PD(68.0=44.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGACGCGCAGGAGATCAT
R:
ATGCTTCCAGTAGAGGATGATCT
Band lengths:
190-1163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)