HsaINT0151758 @ hg38
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128101309-128102115:+
Coord C1 exon
chr9:128101309-128101396
Coord A exon
chr9:128101397-128102079
Coord C2 exon
chr9:128102080-128102115
Length
683 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATCCTTTGTCTGTCTGTCAGAAT
3' ss Score
7.41
Exon sequences
Seq C1 exon
GACGCATTGACGCGCAGGAGATCATGCAGTCCCTGCGGGACTTGGGAGTCAAGATATCTGAACAGCAGGCAGAAAAAATTCTCAAGAG
Seq A exon
GTGAGTGCTCAGCCAGCCTCTGTGTTTGGTTTAAGTGTGATGAAGGGAAGGCTCTGAGACTAACCCTCCGATGCCATTCCCTGGGCTGACCCTGAACTTGGCCTTCTCGTGGTTTGAAAGGATGAATAAGTAACCCCTGTGGGAGGCCAGCCCCTCCCCAGGGTTGCAGGCCTGCTTTCATTGGAAGAATCACAGATCACCTGGAATTTTGCCCATCGGCCAGTGGCCCATGAAGGGAAAACTAATTTGGGGGTGGTTCAAATAGGTAAAAGGCCAGCAAGGAGCACCTGTGCGTGTGGAGGGGGCGGGGCGGGGCGGGGGGCTCACACTGCAGCCTCGTTCCCAGGTGAATTTCTTCCCCATGCTGGTAACTTGCACTTAACACTTTAGTCAGAGGCGCTGCCCCAAAAGATAGCTCCCTGGTGCGGGGCGGCTGCCAGGAAATCTCATGGAACAGCCCTGGGAGTTGCCGTCTGTCCTGGCTGGACCTTCCGGAAACCCTGCGGTCTGAACACTGGCTGGTCCTCGGGGACAGCAGCCCTGGGCTCAGCTGCTGTGGCGGGCTCGTCTCGTGCCGTGCTGTGCCCCTGTCTCTGGGTGTGTGCTTGCTTCACTAACATGGCTCCGAGCACTTATGCGTGTTGTTTCTGCTCTCTCCTCCGCATCCTTTGTCTGTCTGTCAG
Seq C2 exon
AATACGAACGGGCCATTTCTGGGGCCCTGTCACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339:ENST00000373066:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
NA
C2:
PF134991=EF-hand_7=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains