MmuINT0145585 @ mm9
Intron Retention
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32276176-32276910:-
Coord C1 exon
chr2:32276823-32276910
Coord A exon
chr2:32276212-32276822
Coord C2 exon
chr2:32276176-32276211
Length
611 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCCTTTGTCTGTCTGTCAGAAT
3' ss Score
8.04
Exon sequences
Seq C1 exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
Seq A exon
GTGAGTGAGTGTGGTGAGCTTTGTTCTAGGGGATGCTTTAATGGCTTTTGGACTAATTTGTGTGCTGTTCACTCTTGGCCTGCATCCCTGAAGCTGGCCCTGTGTTTAGGAGGAGGGATAAGAAGCCCCTTCCCATAGTAAGCTTCTCCTGAGGTTGCAGCCCTACTCTCACAGAAGAGTCATAAATCTGGAATTAACCCAATGCCTGCAACCTTTAAAATGATAAGATTAGTTGTGGGCATTTCTCGTTAGTGAGAAGTGTCCCTGAATATTCTCTGCCTGATGGGGAGGGACATGTGTGGTCCTTAACTTAGGTTCTGCTATAGCTTGTTCTTTCCTCTGTAGCCACATATGCTGGCCAGAAAGATGGCTCACTCATGAGCAGAGGGCTGCCGGAAAGCCCTGCAAGTAGAGAACAGTTTGTACCTGGCTGGCCTGAAAGCCGCCTGGTCACAGGGACAGCAACCCCAGGAGCCCAGTCCTGCCCACTTCCTCGTGCTGTGCTGGCCCCTGGTGTCTTTGGGTGTGTGCTTGCTTTACTAACCTGCTCAGCGCATTTATTTGTGTTGTTTCTCCTTTCTCCTTTGCATCCTCCTTTGTCTGTCTGTCAG
Seq C2 exon
AATACGGACGGGCCACTTCTGGGGCCCTGTCACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819-Slc25a25:NM_001164358:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(38.7=100)
A:
NA
C2:
PF134991=EF-hand_7=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: