HsaEX0059048 @ hg38
Exon Skipping
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128101309-128102481:+
Coord C1 exon
chr9:128101309-128101396
Coord A exon
chr9:128102080-128102115
Coord C2 exon
chr9:128102370-128102481
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTGTCTGTCTGTCAGAAT
3' ss Score
7.41
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GACGCATTGACGCGCAGGAGATCATGCAGTCCCTGCGGGACTTGGGAGTCAAGATATCTGAACAGCAGGCAGAAAAAATTCTCAAGAG
Seq A exon
AATACGAACGGGCCATTTCTGGGGCCCTGTCACCTA
Seq C2 exon
CATGGATAAAAACGGCACGATGACCATTGACTGGAACGAGTGGAGAGACTACCACCTCCTCCACCCCGTGGAAAACATCCCCGAGATCATCCTCTACTGGAAGCATTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
PF134991=EF-hand_7=FE(15.2=100)
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGCGCAGGAGATCATG
R:
TCAATGGTCATCGTGCCGTTT
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development