HsaEX0059048 @ hg19
Exon Skipping
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663]
Coordinates
chr9:130863588-130864760:+
Coord C1 exon
chr9:130863588-130863675
Coord A exon
chr9:130864359-130864394
Coord C2 exon
chr9:130864649-130864760
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTGTCTGTCTGTCAGAAT
3' ss Score
7.41
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GACGCATTGACGCGCAGGAGATCATGCAGTCCCTGCGGGACTTGGGAGTCAAGATATCTGAACAGCAGGCAGAAAAAATTCTCAAGAG
Seq A exon
AATACGAACGGGCCATTTCTGGGGCCCTGTCACCTA
Seq C2 exon
CATGGATAAAAACGGCACGATGACCATTGACTGGAACGAGTGGAGAGACTACCACCTCCTCCACCCCGTGGAAAACATCCCCGAGATCATCCTCTACTGGAAGCATTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(28.0=31.8)
A:
PF134991=EF-hand_7=FE(15.2=100)
C2:
PF0003627=EF-hand_1=PD(68.0=44.7)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGCGCAGGAGATCATG
R:
TCAATGGTCATCGTGCCGTTT
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)