RnoEX0081877 @ rn6
Exon Skipping
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11448232-11449315:-
Coord C1 exon
chr3:11449228-11449315
Coord A exon
chr3:11448578-11448613
Coord C2 exon
chr3:11448232-11448343
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTGTCTGTCTGTCAGAAT
3' ss Score
8.04
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GGCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGATCTGGGTGTCAAGATCTCTGAACAGCAGGCGGAGAAGATTCTTAAGAG
Seq A exon
AATACGGACGGGCCACTTCTGGGGCCCTGTCACCTA
Seq C2 exon
CATGGATAAGAATGGGACAATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCTGAGATCATCCTGTACTGGAAGCACTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
PF134991=EF-hand_7=FE(15.6=100)
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Main Inclusion Isoform:
ENSRNOT00000020206fB13567
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCAGGCGGAGAAGATTC
R:
TCAGGGATGTTCTCCACAGGG
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]