MmuEX0042866 @ mm10
Exon Skipping
Gene
ENSMUSG00000026819 | Slc25a25
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [Source:MGI Symbol;Acc:MGI:1915913]
Coordinates
chr2:32420305-32421390:-
Coord C1 exon
chr2:32421303-32421390
Coord A exon
chr2:32420656-32420691
Coord C2 exon
chr2:32420305-32420416
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTGTCTGTCTGTCAGAAT
3' ss Score
8.04
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAGAAGATTCTTAAGAG
Seq A exon
AATACGGACGGGCCACTTCTGGGGCCCTGTCACCTA
Seq C2 exon
CATGGATAAGAATGGCACGATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCGGAGATCATCCTGTACTGGAAGCACTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026819_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(28.0=31.8)
A:
PF134991=EF-hand_7=FE(16.0=100)
C2:
PF0003627=EF-hand_1=PD(68.0=44.7)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGTGTCAAGATCTCGGA
R:
GATGTTCTCCACAGGGTGCAG
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types