BtaEX0032884 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98753223-98754413:+
Coord C1 exon
chr11:98753223-98753310
Coord A exon
chr11:98753994-98754029
Coord C2 exon
chr11:98754302-98754413
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGTCTGTCTGTCAGAAT
3' ss Score
8.6
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GGCGGATCGACGCCCAGGAGATCATGCAGTCCCTGCGGGACCTGGGGGTCAAGATATCTGAGCAGCAGGCAGAAAAAATCCTCAAGAG
Seq A exon
AATACGAATGGGCCACTTCTGGGGCCCTGTCACCTA
Seq C2 exon
CATGGACAAAAATGGCACGATGACCATCGACTGGAACGAGTGGCGAGACTATCACCTCCTGCACCCCGTGGAGAACATCCCTGAGATCATCCTCTACTGGAAGCACTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.9=100)
A:
PF134991=EF-hand_7=FE(15.2=100)
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Main Inclusion Isoform:
ENSBTAT00000015802fB6435
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGATCATGCAGTCCCT
R:
ATAGTCTCGCCACTCGTTCCA
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development