GgaEX0007000 @ galGal3
Exon Skipping
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5435784-5436786:-
Coord C1 exon
chr17:5436699-5436786
Coord A exon
chr17:5436206-5436241
Coord C2 exon
chr17:5435784-5435895
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGCCTGTGTGTCAGAAT
3' ss Score
6.42
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GCCGTATCGATGCCCAGGAGATTGTACAGTCTCTTCGGGACCTGGGAGTTAAGATCTCTGAACAGCAGGCTGAAAAAATACTGAAGAG
Seq A exon
AATAAGGACGGGACACTTCTGGGGTCCTGTCACCTA
Seq C2 exon
CATGGATAAAAATGGGACGATGACAATTGACTGGAACGAGTGGCGAGACTATCACCTGCTGCACCCAGTGGAGAACATTCCTGAGATCATCCTGTACTGGAAGCACTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'5-9,'5-7,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(46.8=100)
A:
PF134991=EF-hand_7=FE(16.0=100)
C2:
PF134991=EF-hand_7=PD(27.4=44.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGTCTCTTCGGGACCTGG
R:
ATAGTCTCGCCACTCGTTCCA
Band lengths:
116-152
Functional annotations
There are 0 annotated functions for this event