HsaINT1041859 @ hg38
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128102080-128102481:+
Coord C1 exon
chr9:128102080-128102115
Coord A exon
chr9:128102116-128102369
Coord C2 exon
chr9:128102370-128102481
Length
254 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
GCCTCGCCTCTGTCTTGCAGCAT
3' ss Score
9.5
Exon sequences
Seq C1 exon
AATACGAACGGGCCATTTCTGGGGCCCTGTCACCTA
Seq A exon
GTAAGTATCCATGTCGCTCATGACTGCCTCCCTTGACTTCCATGCCTGATCAGAGCGGGATTCTTGTGGGCCATTATATTGCCATTGTTGTGCTAAGTGGGGTGTGGAGCCCCCTGCTCTTTCTCCTGGGGGCAGAGGCACCTCGTGTGGTTTCTGGGCATCCGAATGCCTGCCCTTGGCTCACTGGGAGGTGGGGGGATGCAGCTGGCGGATGGGCATGTGGGCACGTGGGCAGCCTCGCCTCTGTCTTGCAG
Seq C2 exon
CATGGATAAAAACGGCACGATGACCATTGACTGGAACGAGTGGAGAGACTACCACCTCCTCCACCCCGTGGAAAACATCCCCGAGATCATCCTCTACTGGAAGCATTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339:ENST00000373066:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(15.2=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(25.8=44.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGAACGGGCCATTTCTGG
R:
TGCTTCCAGTAGAGGATGATCTCG
Band lengths:
140-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains