MmuINT0149576 @ mm9
Intron Retention
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26225432-26226400:-
Coord C1 exon
chr2:26226306-26226400
Coord A exon
chr2:26225512-26226305
Coord C2 exon
chr2:26225432-26225511
Length
794 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TACTGTGGCTGTTTTTGCAGGTC
3' ss Score
8.3
Exon sequences
Seq C1 exon
CTACATCAGAAGATTACATTTCAGCTTGAAAAAGGGACGGTGGAATGCAAAAGAAGAACAACAGCTGATCCAGCTAATAGAGAAATATGGTGTTG
Seq A exon
GTGAGTTGTCTGTCGGACAGTATTACCTGCTGCTGCTGACTCTGATCATACTGCGAATTCTTGCAGCCCATCTTCCGGATCCCAGGCTGTCCTCAAATCAGTTTCTGCCTCATTCTCAACCTTCCCAGTTGCAAATGCTGTTCTCTTTTAGGGGTGGGCATGGGGATGGAATCCAGGACCTCACTCCAGCTAGGCAAGCATGCCTCCAAGCCCCAACCTCATGCTCTCATTACAAATGAATAGATATTCACAACAGAACATGGGGAAGCCAGATGAAGTGGTGCAGGGTCTTTAATCCTGGCACTCAGGAGGCAGATGCAAGCCCACATTCGCACGCATAACTGTGTCCGACTTTAGTCAGACCTTTTGTGACTTGCATTTGCTGTATTTCTCAACTTTTTACAACATGTCAGGAGAGAGCTAAGTGTTTGTGGCCAAATCTTGCTGATATTGGTGATACCTCCTCAGAAAAAAAACTAATATGACTTCAGAACATAAGAGTGTTTTCCACCCGTTGTCACACTGCCCTAGAACTGCAATGTGCATGTGTCCCTCTGCAGCACTAGGCACAAAGAGTTGGCAAGGTCTCTTTAGAGCCTAAGTGCATCAGATGCACAGGGCCTGTAGTGACTTTCCCTTCCTACCTGTATGTGCCAGACCTTCCTCAGGGGCTGGTCAGCCTTGAGATTCGCATGCTGGCAAACACAGATCCTCTCACCAAGCACATGAGGGAAGCCCCTCCTGATGACCTAGCCTCTGTCCTAGAGGCTGATCTACTGTGGCTGTTTTTGCAG
Seq C2 exon
GTCACTGGGCAAGAATCGCTTCTGAATTGCCCCATCGGTCAGGCTCCCAGTGTCTGAGCAAGTGGAAGATCTTGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281-Snapc4:NR_033572:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057128=MRG=FE(17.4=100),PF116263=Rap1_C=FE(19.3=100),PF139211=Myb_DNA-bind_6=PD(36.1=68.8)
A:
NA
C2:
PF057128=MRG=FE(14.6=100),PF116263=Rap1_C=PD(2.5=14.8),PF061126=Herpes_capsid=PU(3.8=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: