GgaINT0126131 @ galGal4
Intron Retention
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7899704-7901107:+
Coord C1 exon
chr17:7899704-7899798
Coord A exon
chr17:7899799-7901021
Coord C2 exon
chr17:7901022-7901107
Length
1223 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTACTCCTCTTCCTTTTTAGGTC
3' ss Score
13.4
Exon sequences
Seq C1 exon
GTACTTAAAAGCATTGCACCGTGATGTAAAGAAAGGCAAATGGAGTTTAAAGGAAGAAGAACAACTAATTGATCTGGTGCAGAAGCACGGCCTGG
Seq A exon
GTGAGTTTTCCTGTGGCTTAATTTTTAGCTCAGGAAAGTAGTGTTCATTATTTGAGTTTCTTCCTCTTTTCTTTTAAGCAGTGGCAGGCTCTGTTTCGTGCTGATGGTTTCGAGCTTCCTTACATGGAGCAGCCTTTTCCTTGGAAGTTCACTTATTAAGGAGCTGCGTAGCAAAGGGCCGCATAGCTGTGTCTGTCACAGCTCCACAGAGCTCACACAGCCTCTGAAAGAGTTCTCTTACTTTCTCCAATACTATTTTTCAGCATTAGGTTTTAACCTTTCAGCCTCCATCTGAGCGTGCTATTAGTGCTGTGAGGAAGGGGGATGTAATGCTGCCAGGGTTTTGGTCACTGGTACGTTCATTTTAGCTTCTGATGTTGGCTGAGTGTATGGCAGAGCAAAGTGCAAAGAAATCTTAGATAAATCAAAGGTGAGGATTAGGATTTTATCATCTATTCATATATATTTCTCTGCATAAGAGTCAGTTACTGTAAGTATGTATGGTGTTCTGCCCTGAAAAGGAAATCAATCTCTTTTCCCACCCCCTACTCTTTTACACTCTGAATTTCACAGCACTCCTCTCTGTGTATGATGAGCTTATCAGGATGGGTGAACAGTTCTCCTGCTGGATCTTCTTAGGTGCAATCTAATGCAAGACAGACACTTTCCCAATCTCACTAACAACTCGAAAATAGCAGAAGGCTCAGTAGGGTATGAACTACTCCAAACCTTTTTAGAGATGACGCTCTCTTATGTAAATGTCACACTTGCACTGCCTCCATCAGACTGTATTAGCTTTGCTTACAGCTTTTGGTGCTACTGAAGCACAGGAATCTTATTCATGAAAGCATTTGAATATAAGTATATACAAGTTCTCCTATGTTTCAGTAAAATGTAAATCAGATGTTTCCTGAAGTGAGGTGCCTTAGATTCCATGAAAACATACAGCGTTGCAACTTGGTGCTGGTCTGAGGAAGTCAGTCAGACTATTGTTTAAGGAGGTGCAGCATTTCTCTGACTGACATCAGGGAGGCTTCGTGTGATTTAAATGTAGTTTAAAAAACAAAATAAAATCAGCCCTCCGCTCCGACAAAGACATAAACCCGTCCAACCAACCCTCATTTTAATCTGAGTGCTGACATCTAACTGGCTTTGTGGATGAGAAGTACTCTCCCTTCAGTTGGTTGCATCAATAGGTATGCTCTACTCCTCTTCCTTTTTAG
Seq C2 exon
GTCACTGGAGTAAAATAGCTTCTGAGTTGCCACATCGGACTCGCTCCCAGTGCCTGAGCAAGTGGAAAATCATGATTGGGTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910:ENSGALT00000002951:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PD(36.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]