MmuINT0153196 @ mm9
Intron Retention
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:116696489-116700975:-
Coord C1 exon
chr7:116699725-116700975
Coord A exon
chr7:116696626-116699724
Coord C2 exon
chr7:116696489-116696625
Length
3099 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTGCTCTTGTTGTCCACAGAAA
3' ss Score
11.27
Exon sequences
Seq C1 exon
GTCTCAGTCAGTCTCTCCACCTCCAGTTTTATACCCACCAAGAAGTCCCATCTACCCACTCAGTGACAGTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCTAAATCCCAGGTGCTCCTCAAGGACCGGCATTCTCGAAATCCTTCACTCCTAGGTCAAGATCCGTCCCCAGAAACCTCACCACCCATTTGTACCCTCAAGGCTACCAGCTTCAGCTATTTGGACAGAACCCCTTCATTACGCAAAAGAGAGGACCAGAAGGAGACTGTCCAGGGTGCAGTCCAGGATGTAGAAGGTGTGGCTGCTTGCCTCCCCCTTGCCCAGAGCACCCCATTCCTAGGGGCCGGGTCTCGGAGTGTCTTGCTGAGTTGCACTGGTACCCGAGCCCATAGCCTGGGTATCCGAGAGAAGATCTCAGCATGGGAAGGTCGCCGAGAGGCTTCACCCAGGATGAGTCTGTGTGGAGAGAAGCGGGAGGGCCCTGGGAGCGAGTGGTCGGTCAGTGAGGGCTGCCCCAGTGTGGGCTGCCCCAGTGTGGTGCCATCCCCCTGCAGCTCAGAAAAGACCTTTGATTTCAAAGGCCTCCGGAGGATGAGCAGGACCTTCTCTGAGTGTTCCTACCCCGAGACAGAGGAGGAGGCAGAGGCACTTCCTGGACGGGACTCTTTATACCGGCTGGAGAAGCGTCCAGGCCGGACTGAGCCCAGTGCCTTGCTCAGGGGGCATGGCATCAGGAAAGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAGATCGAACAAGCCCTAAAGGAGCAGCCTGGCCGGGGTCTCCCCCAGCTCCCTAGCAGCTGCTACAGTGTAGACCAAGGGAGGAGGAAGACTGGAACTTTGGGCACCTTGGAGGAGCCAACAGGAACTGCAAGTGTAAGCCCCAGCAGCAGGGCAGGAGGAGTGGCCGGAGTTGCTGGGGAGGCAGGCCCACCCCTGGACAGGGAAGGCAGTGCTTCCATGAAGTCAGAGACCCCTGGAAATAGCTCCAGTCCCCAGCTGCTGCCTCCGAAGAGCTCCCCTGATCCAGCTGTGAACCCTGTTCCCAAACCCAAGCGTACCTTTGAGTACGAGGCTGACAAGAATCCTAAGACTAAGCCAAGCAATGGTCTACCTCCTTCACCCACACCTGCTGCTCCACCCCCCTTGCCTTCCACCCCAGCCCCACCAGTCACCCGGAGACCCAAGAAGGACATGCGTGGTCACCGGAAGTCACAGAACAG
Seq A exon
GTAAGGCATGTGCTCCTGTGTCAGGAAGCAGGACCTAATGGCATTCTTTTAAATGGAAGAAGCAAGAGCAGCATGTGCTTGGGTCACAGGCGTATGCTACAAGCTCTGAAGCGCTGAGTAATTAATTGTTAGTTTGCCAGTTTGGGCAGAGAAATGGTTCTCCTGCTCCCCACTACCACACACATACCTCCTTTCATTTTTGTGCCTGAACTGGAACCTGCTATAGACCAGGCTGGCCTTAAACTTTTGCCTTGGCCTCAGGGCTGGGTTTAAAGTCATGTACCACCACCAGGCCTGTCCTCCAGCTCTTGAGTGGAAGAAAGGATGAAAGCCACTCTTGCCAGTGCTGGGAGGCTTTGTTAGTGTAGAGCCAGCTATGCTAACAATTCCTTAGCCCATCACTGGAAGGTCAAAACTGCCTTCATTTTAGGTCTTCTCGAGAAAACAGTCTGTTGAAGGACTGATAGGATATTAGCTTCACAACCACATGAAGTGCCTGCACTAAAAATTAATTCCTTAAGTGAAGCTTTATCAGAGGATTGGACTTTATCACTGCTATAGGGATGCTGACAATGATTCCTGTCTCTCGAGGCCTCCAGCCTGTACAGATGGCCTGGTTCTGTTTCAGAGGGTGGGTCTTGGGTCTTGAAAGAGAGGCATATGGAAAAATATTTCACCAGCTTCTTGGCCAAACCCAAGAACAACCTTTTGTGGGAGCTTCCAGTTGAAGAACAGCTGGTCCCTGTTCAGTTGACAGAGACCTGTTAACCTCATTCTGTGGCAGTCTGGAAGCAAGTGTTCTTTGGAATTCTTACCTTTATCCTATATATCCCAAGATTGCTTGGGCATTCAGCTTGCTTTCCTTCTGGGACTTTTCTGGTATGATACCCAACTAAAGCTATGAGCTCCAGAGACTGTGTCTCAAAGAAACAAGGCACACAAGAACGGCACACACCTTTAATTAATCCCAACACTTGGAAGGCAGGCAGATCTCTATGAGTTTGAGGCCAGCCTGATCTACATAGTGAGTTTCAGGCCAGCCAAGCTACAGAGTGAGACCTTATCTCAAAAAACAAAACAAAACAAAGCAAAACAAACCTCAAAAAACAAAGTGGAGAATAATCAAAGAAGTTAACCACATCTGACTTCCACATCTACATGAACATGTGCATACATGTATACAATCACATATGTCCTGGAAATAGACAGTATTTATTTTGATGAGAGTTAATATGTTAACCTTCATCGTGGTACCTGAATAAGATGTCAAATCTGCTCTTACTCCAATGAAGACTTGATCTCATTTATACAGAATTTGACTGTTTAGTTGGGAAATCTTGGCTAAGACAGAAATTTATGAGGCATCAGGAATAAAGTACTTGGCTGTGGATATTTGTACATATCAGGACAGGATACTTACAGACAGAATTCTAAGAAACCCTGGCATGTGAAGGCCTTTTAGAGCTGGGCACAGTGGCACATGCCTTCAGTCCTAGCAATCAGAAAGCTATAGGTAGGCAGTCTCTGTGCGTGTGGCATCATGGTCTGTATATCAAGTTTTAGGCCAGCTTGGCTACATAGAGAAACTCTGTCTGGAAATAATAAATATAAGACCAGCCTTTTAAAAAAGAATCTTTCATTAGAGCGTAAAAAATAATTACCCGCAAGAGAGTGCCAGGATAAGAAGTGTTGTGTCATGTTGAATGCTACAGAGGGGTCAGCTGAGCTGAAGAGGGGGGTGTAGTCAGTCCTTGACTTGCAACCCAGGGCTCTGAAGATAAGTGTTCAATAAACAAGAAAGAGGAGATGTCACTGGAAGGGAGAGACACTAATGGATAAGGCTCAGTCATGCTCCTCTTTCCCCGAGGGACATGAAGGGGAAATTCAGAGGACTCATGTGGTAGAGAGACACCAACAAGTTGTTCTCTGACCTGCACACGCATGCCTCAAATAAGTAAATGCAATCAAAAAACAAAATGTGTCAGATGCCATGTCACCTAGTTGGCTTTCCTGGGAGGGCCGTGCCTTGGAGAGAGAAATACATCAGCCAGCATCCCAACTCCCATGAGGGCAGAGGAAGAAGTGCTGTGGCCTCAAGACATCTTAGGGCCCGATAAGCTATGGTTGCCATTCTGCAGTGTAGGTTTTCTGGGGCATAGAAAGGAACAGGGGACTAGTTTCACTGAAGAAGAGGGCTGACCTTTTTTTGAGGGTTCAGCCCTTCTCATGTCAGCAGATCATCCTGTACCATTTCCTCCTAACAGCCCTGGAAGTGACCTTCCAGTGTCAAACCCTTAGGGCCTGCTCAGAGCCCCTTCAGGAGACTGGACTCTATTCCTTTAGGACCTGTAGACTCTTCTCAAGAAATGATGCTTCTAGGTCTGAGGGGCCAGAGTTGTGGTTGGAAGCTTAGACCCTGAAAGAGGCAGCTTTGGGAAATCCTGCCTCTCTCACTTCAGCCGCCTTCTTTGTAAATGACACAAAATGTGCCAGCGCTACTGTGAAGGTCAGTGGGAGACACAAGGACAGGTATATTGACATGGCATCTGACCATGTTTTTGTTTTTAATTAATTGCATTTTTATTTTAGGCATGCATGTGGAGGACAGAGAACAACTTATAAGAGTTGGTTCTTAGCTGGGTATAGCACACACACACCTTTCACCCCAGCACTCCAGAGGCAGAAACAGGTGGATCTCTGAGTTTGAGGCCAACCTGGTCTTCAGAGAGGGTTCCAGGACACTCAGGACTACATAGAGAAACCTTATCTCAGTAAAAAAAAAAAAAAAAAAAAAGAAAAGAGAGGGGAGGGGTGAGAGAGAAGGGAAGGGAAGAAAGGAAAAGAAAAGGCAGGTTATCATCTTACTAGCCCAGACAGGATGATTTTTAATTGTGGAAATTATTACCTCTTACTGGTATTATAAGGATAAGCACACTACAGTCACTCATGGGATCCTTCAGACTATCTGTTTTCTTACTCAGGGATACAGTAACAGGCTAAAGGAGCAGGGCCTCTGGTCTTCACTGTTTCCCATGGCCACTCTCAGCAACACAGAGGGATCTGGTTCAGCCAACTGACTCTTGCTCTTGTTGTCCACAG
Seq C2 exon
AAAATCCTTCGAGTTTGAGGATGCATCCAGTCTCCAATCCCTGTATCCCTCTTCTCCTACTGAGAATGGTACTGAGAGTCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAGAATGCCTATGAAGATATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024-St5:NM_001001326:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=NA C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: