HsaINT0159823 @ hg19
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8747620-8752756:-
Coord C1 exon
chr11:8751497-8752756
Coord A exon
chr11:8747757-8751496
Coord C2 exon
chr11:8747620-8747756
Length
3740 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CTTGCTCTTGTTATCCACAGAAA
3' ss Score
10.3
Exon sequences
Seq C1 exon
GTCTCAGTCAGTCTCTCCACCTCCAGTTCTCTCCCCACCAAGGAGTCCCATCTACCCGCTCAGTGATAGTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCCAGCTCCCGGGTGCTCCTCAAGGACCGGCACCCCCCAGCTCCTTCACCCCAGAATCCTCAAGATCCCTCCCCAGATACTTCCCCACCCACCTGTCCCTTCAAGACCGCCAGCTTCGGTTATTTGGACAGAAGCCCTTCGGCGTGCAAGAGAGACGCCCAAAAGGAAAGTGTCCAAGGCGCAGCCCAGGATGTAGCAGGGGTCGCTGCCTGCCTCCCCCTTGCCCAGAGCACGCCATTCCCGGGGCCAGCAGCTGGCCCCCGGGGCGTCTTGCTGACCCGTACCGGTACCCGCGCCCACAGCCTGGGCATCCGGGAGAAGATATCAGCATGGGAAGGTCGCCGAGAGGCGTCGCCCAGGATGAGCATGTGTGGAGAGAAGCGGGAGGGCTCTGGGAGCGAGTGGGCGGCCAGTGAGGGCTGCCCCAGCCTGGGCTGTCCCAGCGTGGTGCCGTCCCCCTGCAGCTCTGAAAAGACCTTTGATTTCAAGGGCCTCCGGAGGATGAGCAGGACCTTCTCCGAGTGTTCCTACCCAGAGACTGAGGAGGAGGGAGAGGCGCTCCCTGTCCGGGACTCTTTCTACCGGCTGGAGAAACGGCTGGGCCGGAGTGAGCCCAGCGCCTTCCTCAGGGGGCATGGCAGCAGGAAGGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAAATTGAACAGGTCCTGAAGGAGCAGCCGGGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTGCTACAGCGTGGACCGGGGGAAAAGGAAGACTGGAACCTTGGGCTCCTTGGAGGAGCCGGCAGGGGGCGCGAGTGTGAGCGCTGGCAGCCGGGCAGTCGGAGTGGCTGGTGTTGCGGGGGAGGCGGGCCCACCCCCAGAGAGGGAAGGCAGTGGTTCCACTAAGCCCGGGACCCCTGGAAATAGCCCTAGCTCCCAGCGGCTGCCATCGAAGAGTTCCCTCGATCCCGCTGTGAACCCTGTCCCCAAACCCAAGCGCACCTTTGAATACGAGGCTGACAAGAACCCCAAGAGTAAGCCCAGTAATGGTCTACCTCCTTCACCCACACCTGCTGCTCCACCTCCCTTGCCCTCCACCCCAGCCCCGCCAGTCACCCGGAGACCCAAGAAGGACATGCGTGGTCACCGCAAGTCCCAGAGCAG
Seq A exon
GTAATGCATGCCCCTCCGGTGTGTTGTAGCTGAATACCGTGGCTTTCTTTTAAATGGACAGTGCAAACACAGATTGTAGGATGGGTCGCAGTCATTAGTGCTTCGTAAGCTCTGAAGTGCTGAATAATTGTTAGGTGGTAGTTGTGGTAGTGAAAAATGAGATTGTTCTGCTCTTACAAGATACTTGGACATGAGTGGGAATGCTTACAGGATACTTGGGACCTGAGTGCTGGTCACTGAAGGTATTGGCTGGGTTTGGCCTTTGGGGTAGAGCTGGGCTGTGTCCTGCCCCTGTTGTAGCTTCCTCAGTCTTCTGTTGGGAGTAGGTAAAGCAGGCAGTCCTTTGCGGAGTAGTAGGATCTTAGCCTCCCTACCACCTGAAGTACCAGCATTAGAAATTAATTTCTTTGAATGAAGCATTATCTGAATACTGCATTTTATCATTAACATGGTAGTGTCGGCAAATTTAACACAATTCCTTCTCTCCTGAAGGCCTCCTGGCCATATACGAACCCTGGGCCTATATCAAGAGGGGATTATTGGGAAGATTGATGAAAAAAGGAGTAAAACAGGAATGAGCCTGTTCCGAGGCTCACGTTGGTTTCCTGGTCAGTCTCAGGATTTCTAACCCCAGATTACCAAGGGCTGTCTCCCCGGTAACTTGGAGCTGGAGCTATTGGAATTGGTGAAAGCTGGCAGGCGTCTTGTTCTCTGAATCAGGGTAGGCTGGGAGTGAGCTTCCTTGGGAATACTTATCCTCCTACACCTTACTGCCATTCTCATCTAACCCCACGACTGATGGGTATTCAGGTTTGTTTCACTTCTGGGGATTCTTTAGTTTGTCCCCACACTTCAGGCTTCATCTAACATATCCCATCTCATATATAAACTTTCCTGCCATGTGCAGAAAGGAAGAAATTTCAAAGATTCAGACCCCCGAGCCGGAACAGCCCGTGGCTAAGGGTAATCCCGTGTTTGAGTCCACCCCAGAATGCTCACTGGCTCTTTAATTCTTAAACGGCCTGCCAAGAGTGTTTGCTTTGTCCTTGTTCATCCATTTCTATAAACATTCTTCTAGAGCCTGCTGTGCACCAAGATTGTGCTGGTCAAGAGGATGCAGAGGCAAATAGGACATGGTTCTTCCATTCAAGGACTTCGTGGTCTGGTGCACAGATAAATCATAGATAATGTCATACGTGCCATGACTCATGGCAGTGCAGGAGGCCGCAGAGACCCAGAGAAGGGGCATCTGAGTTAGATGGGGGAGAGAAGGGAGGCTCCTCATAGAGGGAGTTGCTGAGCTAAATTTAGAAGAGCCAAAAGCAGTTGGCTAGGTGACCAAAGGGAGTGGGGGGGAGAGTTCATCAGCCTGAAGGTTTTACACATATTCCACCCCACACTGCATTTATATATAATATATACACACGTATACCATATATGGAGGAGTCCCTTCATGTAAGAATTAACTTAGCAAACTTAAATCTGTGCTCTTGGAAAAAGAGAAACAGTTCCAGAAGTGCAGTCTGTTCTGTATGCCATTTCACACAGTGAACATGTTCCATGAGGAGTAGAGATGGTAAGTTTGTGTCTGTTATACCAAGTGTGATTCTTATATTTAATATACTTTTTTATTTTAAAAAAAATGCAGTCCAGGTGAGGTGGCTTACACCTGTAATTCCAGCACTTTGGGAGGCTAAAGTGGGAGGATCATTTAAGACCAGGAGTTCGAGACAGCCTGGGCAACATAATGAGACCTCATCTCTACAAAAAATTTAAAAAATTAGCTGGAGTGTTGGCATGTGCCTGCAGTCTCAGCTACTTGGGAGGCTGAGGAGGGAGGATAGCTTGAGCCCAGGAGGTTGAGGGTACAGCGAGTATGATCACACCACTGCACTCTAGCCTGGGCAACAGCACAAGACCTTGTCTCTCAAAAAAATTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTAAAATGCAAGCCAAGCCAAATGTTTCTTCTGGCATTCAGCCAAAAAAAAAAAAAAAAACCTGGGGAGAAACTATTAGTTTTAATGAGAGACAGCATGTTGGTCCTCAGTGTGACACCTTCCTGGGGGATTTTCAAGGATAATTTGACTGAACATGATTTGTGTCTTATTTACTGACTTGAGGGCTACCTGCATACGATGCTGAGTCTACTGTATATGCCAAAGAAAACTTGCTCTCACACTAACTCTGGTCCTGGGCCAACATTTGCGAACCACTGTGCTCAGCCATTGGATGTTTAACTAGTTGAGAATCTCTGGGCCAAAGACAGAAATCTGGGAGTCATCAAGATAGAGATGGTAGATATGGCAATGGCCCATGGATATTTGGTCCCTAGAAAGTGCAGAGTGAGAAAGAGTTTTTAAGACAGAACTCTGAGAGACCCGGACACTTAAAAGGCAAATGGAAAAGGAGAACCCCTCACAAGAGTCTGAAAAGTAGTGGCCAGAGAGTTAGTTGAAAGCCAGGAGGGAATGTGTCACAGAGGCACACGGAGGAGATGTCAATATAAAGAGTGTTCGGTTGTGTTGAGTGCTTGGGGCGGGGCAGGGGCAGGCAAGCTAAGAACAAGCTGTAGCCTTCAGGACACTTTTAGCCCTTTACCTACACCCTAGGACTCTCAGGAGAAGCTGTTAGTAAACAAGAGAAAAAGGGCTTTATTGGCTGAAAGGTCTGATGGTGCCCCAAAGAAGAGGGAGGTGTTCATGGGTGGGAGGAGGGATCCAGTCAGTGCCTTTCCTTCTTTCCCTCCCCAGGAGCCTGCGGGGACTTGCCTTGGAGAGGGAGAGGGTACAGTTGGGGTCTCAGATGAGGGACGTACCTCTCTCATGAAGGAGAGGGGCAGAGAGTGCTGTAGGCTCAGGGTGTCTTAGGAGACAACAAGCTGTGGTCTTGAAATTATACAGTAGAGAGGAAGGTTGTCCAAAGGATGGAAAGGAGCAAGCTAGCTGAAGGGAAGCCTGGTCTTGGAAGCAGCTTCTGGCTGCAAATTGTCCTCCCAGCTCCACCTTGGCAGTGGTCTTATTTGTTTTAAGGGCTCAGCCCTTCCTGCTTCAACAAACCACCCAGCAACAACTGCTTTTCCAACCCCCTGACAGCCCTGAGTGGGACCCTCCCAGTGTTGAGCCTTCCTACCTGCTTAGTGCAGTGGCAGGAGTCCCCAGCTAGGATGCAGATGAGGATGTGAGACTCCAGAGGCAGACCAGGCACTCAATTCCAGTGGAATCACAGACACTTCTCAAGGAGGATATTCTCTAGGGCTCAAGGCCAAAATTATAGTTAAGAGCTCAGGCCCTGGAGTGAGACGTCGCCTGGGAGAATCATGCCTCTGTCACTTCCATCTCCTCTTTCACAAGATGTCCCAATACTGGTGGCACTGTTGTGAAGATTAATGAGATAACACATGTAAAGGTGGATTTGACGCAGCACCTGGAACAGCATGCTTTTAAGCTGGGGTAGTTGTTATCTAATAGCGGTATTATTCAGGATAAGGCACATTGCAGGCACCCAGGCTGGGGCCTTTCAGACCATCTGTCTCTTCATTTGGATGGTAAGTTTGGACCCACCTTGATGCTCTTTCAGAAGCTGCCTTTGTAAGGAGGGCCTATGGTCTTTGCTGTTGCCATGGACATTCCCCAGCAAGGCAGCAGAGATCTGATTCAGCAGGAATGACTCTTGCTCTTGTTATCCACAG
Seq C2 exon
AAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-ST5:NM_213618:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=NA C2=0.994
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000319678, ENSP00000350294, ENSP00000431139, ENSP00000431252, ENSP00000431332, ENSP00000431673, ENSP00000431990, ENSP00000432872, ENSP00000433008, ENSP00000433175, ENSP00000433346, ENSP00000433528, ENSP00000433528f10447A, ENSP00000433647, ENSP00000434332, ENSP00000434930, ENSP00000434935, ENSP00000435180, ENSP00000435228, ENSP00000435562, ENSP00000435925, ENSP00000436363, ENSP00000436748
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)