GgaINT0058371 @ galGal3
Intron Retention
Gene
ENSGALG00000005927 | ST5
Description
NA
Coordinates
chr5:10640752-10645152:+
Coord C1 exon
chr5:10640752-10641968
Coord A exon
chr5:10641969-10645015
Coord C2 exon
chr5:10645016-10645152
Length
3047 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
CTCCTTGTTTTAAACTTTAGAAA
3' ss Score
7.67
Exon sequences
Seq C1 exon
TCTAGGTGTCAGTCAGTCTCTCCACCGCCTCTTTTGTCCCCGCCAAGAAGCCCAGCCTACCCGCTCAGTGACAGCGAGGACTCTTGCCACTCCACGCGTCTCACCAAGGCCTCTGGCTCCCGGCTGCGCCTCAAGGACTGGAGCAGCCGCACATCCGCGCTGCACAGCACCTCCACCAGCCCATCAGACACCGATTCTCCCAGCCACCCTCTCAAAGCCGTCAGCGTGGGAGCTTTGGATAAAAGGCTGTCTGTGTTCAAGGCGGAGGACCAAAAGGAGAGCCCGAAGGAGGCTCAGGATGGGGATGCAATAGGGAGCCATCCTCTGGCCCGGAGCACTCTGTCCCTAGGCACTGCTGTGAACCTGAGGAACCTATCCCTTAGCCGGACGAGCGTCCGCTCCCAGGTGCTGGACATCAGGCAGAAGATCACAGAATGGGAGTGTCGTCGGGAGCCGTCTCCCAGGATGAGCACATGTGTGGACAAGAGGGATGCTGGGGAGAGGTCAGGCAGTGAGAGCTGCCCTAGCGTGCTGACCTCTCCTTGCAGCGACAAGACGTTTGATTTTAAAGGGTTCAGAAGAATGAGCCGAACGTTTTCTGAGTGTTCTTACCCAGAAACAGAGGAGGAGGAACTGCTGGACAGGGATTCCTGCCATCGGGTGGAAAAGAGACCAGGCAGGAGCGACCTTCCTTCTGCCGCTTTTCTCAAGGGCCACGTGAGGAAAGAGTCCTCTGCTGTGCTCAACAGAATACAGAAGATCGAGCAAGCACTAAAAGAGCAGCCTGGCAGGGGCCTCCCCCAGTTACCGAGCAGCTGTTACAGTGTCGATAAAGGGAGGAAAAAGTCTCTGAGTGCAGTGGAGGGACTGAGTGAAAACCTAAGTAATAGCAAAGGAGGGAGCGTTATTTTGGGGAGTGAACCAGAAACACCTACCGAGGCTGAGATAAGCAGTAAGACAAAGCAGGGAGTTACCTCAAACTCTGCCGACCCTAAACTGCTTCTTGAAAGCTCAGCGAACGCTGTGGTGAATCCTGTCCCCAAGCCCAAACGCACCTTTGAGTACGAAGCGGACAAAACCCACAAAAGTAAACCAAGCAATGGCCTACCTCCATCTCCAACGCCTGCTGCTCCTCCTCCCCTCCCGTCCACCCCTGCACCCCCAGTGACCAGACGGCAGAAGAAAGACTCACGCTTTCACAGAAAATCCCAGAATAG
Seq A exon
GTAAAACTGAAGGAAATGTCTTCTGCTTGAGCTTCAAATTAGTAGCTGTGGTTGATTTATTTTTTTTAGTAACAATAGTTCAGGTTCTCCCCCCGATAGAGTGCTTTTGACCTGAGAAATGCTAGGAGTTGGGTGCTTTTTTCTGCTGGACTGCATGGATAGGGTGTGTGGGTGAAATACTCCTGCATAGCCACAGCTTTGGAGTTCTCCAACCTGTGTTCTTTAATCCCTGGAAAAGACTTTAGGTCGTTTTGGCTCAAATGCCCTTACATTACACAAGCGTAATTTCATTATCCCCTTGTAGCAGGACCGTTAGTCATCTGTTATAGTCCTTGGCTGTCTGTTTACTGCAAAACATGTCTGCAACAGATCTGTGTTTCCAAAGCTTGCTACCACAGCAGTTGTGTCGGTTTTATGCGATAGTGGTGATGTTGTTTAATTCAGTGCTTAGAAATATTGTCCTAAGTTACTATCAGCAGCTGTAGAGGATTAATGTTGAGAAAACCATATTTTAGCTCAGATTATTCTTGAGTTAATAATGAGCAGAGTATATGGCAATGTTTCCACAGTAGCCTGTGGAGTTTGACTTGTTTTAATTACGTGATTCCCATTGGCTTCTTGGAAATGGTGAAACTCATTCTGCTCTCCGTTTAGAAAACTGTAGGAATCATTGATAAACATTCAAACTACTGCATTTTGAATGTGTTCAGCTGTCTGTGAATGTGTACAATATACAGCTGAAGTCTAGTGATGAGCTTTGTAAGTAGCTACTAGACAGCGTTTCAGAGGAACACTAGGAATTCTGTATCTGGAGCTTGGTGGTGTCTCAATTTATTTCAAGTTGATGTCAGCACAACCTGACCTGAAGTGAGCTGGGGAAGGAAAAGAAGAGTAGCCTTCAGATTCTCTTCTTTAAAGAAACACCTGTTTCTGAAATGGATCAGATGATTCTGCTGGTGGTTTCTTGGTTTTCTATTTTTTTTGTCTCTGATTAAGAGAAGGGGTAAAATGTGGGAAGCCAAGCTTTGATTAGCAGTGCTTATCTTGGAGTCCTGGCAGTAATCTCAGTTAGAGCAAACAAATCCAGGTTTTAATGAGAATCTGTGAAATAAAGCTGACCTCATTTTGTTCAGCACAGTATATGCAAAGTACGGAAGACAAACAACGCCTTTTCAGTGTTCAGGTATAAATAATAGTCTTTATTGGAAAGCTATGGGACAAGTCATAAAACAGTATGTATTAAGTGGTCTGTGTGGTGAGTGGAGGGAGGAATGGATCATGAGAAATTATTCTTGCCGCAGGATCACCTCATGACTTAGGTCTAAGCTAACAAAGTCAGTCTTTAAGTACATGCTCATGCTGAATTTGGGGCCATACATGTCATCTAAGAACCACGGTATTTTTTTGCAATTCATTTTTGAGCTGAAATTTTGAAAGCTTTATTCAGGAAGAGGTGCAGTTTGTGTGTGTGCCTGCTTTTCTGCAGGCTGAGCTTCCTGTAATTTTATGAGAAAATGGGGCAACACGGTTCAGCAATGGACTCTTGGTCCTGAATGGTGCTGATAGGCATGAGCCCAAAGCAGAAGCAATGTTTATCAATTTAAGTTGTGATTAGAGGAGTGTATGTTTTAGAACTTGTGGTGCTATCCTGTGTCTGTTGATTCTTGTAAATCAGTTTGACATTTTACAGGGTACGTATTCATTTCCTTGGAACATATGTGTGGTTTTCAGGAATGTCATGAGAGGGGACTGTGTATATATATTCTCTTCACAATTTGGTTGAAAGCAGCTTTTCTGGTGGTTAATTTAACTTCACAGTAAAATGGAGGAAGTCTGTCTTATTAGCAAAGATAGCAAAGAACCACTTCTTATTCTGAGGACCTGATGCTCAGGTAGCTTCCACATTTCATATCCATGTGAGATGGATGTTCCCTGAAGGCTTGGAGATCTTCTGATACTGACAATGAGTGGGAGGGGAGTGATGGGATGGTTTGATGTTAATCTGTGTTGGGTAACAGTAAAGTATGGGAATCAGCGCAGCCTGTGCAAGCCTTACAGCAACACTCTTCAGCGAGCCCATTTTTCAGTCCATTTCATCTTTAGCACTAAATCAATCAATCAGATGAACACTGGCTCTGGTAGAGCTGGCAATGCAAGCCACGTACCTCCCAGCTTCAGTGTGGATATTGCCTCAGAGAACATGAGTTGGGCAAACCAGGGAATAGGGAGGGCTTGGACTCCACCTTCCTGCAGCGTGCGTTATCCTATGTCCAGTTAGAGGTTTGGGGCCAAACTTCTCACCCATGGTGAGGGGAGTAAACCTGGGCAAGAGGGGCCAGGGCTCTCTGTCTCCAGAAACCCATCTGGGCCAGCTGGTCCTCGCTTTTTTTTTTGTTTGTTTTTTCTTGCCAGAAAGCCCAAATCTTCAGAACCCAGGCATCAGCCAGGGTTACTCATCTACCCCAGATAGCATTTATTTCCTCCATACTTTGTGCTTTTCTGCCAGTGCTTGATACAGGCTGTGCAAGGGAATTAGGTGACTTTTTTAAACATTTCACTCTGCCTTTGGCATTTTTACGCTGTCCTTTACGTGGGGAGATATCTGAAGGTTCAAGACATGCAAGTGTTTTCAAACTAAGGTTTATATCTCCTCGGACAACCAGCGGAGAAGAGCTTTCCAGAGAAATGTCTTTTTCTTGATGAGAGAGCCACGTTTTTCTTGGGCTTCTGACAATGACAAAGAAACGTGTAATCTGAGGGCTGTGTAGCTGACTTACTCTGTAACCTTTGAAAAATGTCACATGCTTTCTCTGTATTTTCTCCTTCTCTGTCTAATGGGGATAACAATACTTCCAATCTCATAAAAGTGTCATAGTTTGTTATACTGAAGACTGCTGTCAGTACAGGACTTGAGGCTCCTCTACAAGTCCTCTTAAAGCATGACGTGCAATTTTGTAGTCAGTTTATATGCATTTCTTAACTGCTCAGATAACTGTTTGAGTCATTTTGCATTCTAGTTACTAATTACTCCTTGTTTTAAACTTTAG
Seq C2 exon
AAAATCCTTTGAGTTTGAGGATGCGTCAAGTCTGCAGTCATTGTACCCTTCCTCCCCAACTGAAAATGGGACTGAGAGCCAGCATAAATTTGGATCTAAGAGCACTTTAGAAGAAAATGCCTATGAAGACATTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927:ENSGALT00000009535:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]