DreINT0156557 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28241784-28246011:-
Coord C1 exon
chr7:28244761-28246011
Coord A exon
chr7:28241909-28244760
Coord C2 exon
chr7:28241784-28241908
Length
2852 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTATCTCTGTTTGTTTGTAGAGA
3' ss Score
8.47
Exon sequences
Seq C1 exon
GTGTCAATCTGTGTCCCCACCACCAATTCTTACTACTGGAAAAGAGCCAGTTTCCTCTTACCTCAGTGGCAGCGAGGATACCAGTCAGCAAGGAAAGTACGGTAAAGCTGATGCTAAACTCTGGACTCAAAAGAACTGGAGCTGTAAGACTGCCAGCTTGAGAAGTGGCGCCTCGCTCTCCACTGACTTTGAATTTCAAAGCAGGCTGACAAAATCTAGGAGCATTAGCTGTCTGGACAAGAAGCTCACCATCCATAAGCCACCAAGTGGTGATAGGCAGGATCAGAAGGAGAATCAGCCACAACAGACCCCCCCTATTGGGGATGGATTGAATACTGGACTGCTCAGCTTAAGTACTACTTCAGTAGGACCTTCTAAGCTTGGGCACAAGCGAACATTCTCACTCAGTCATACAGGGACGTGCACCTCATCAATCGCCATACGCAAAAAGATCTCGCAATGGGAGGGTCGGAAGGAGGCTTTGTCTAGGATGAGCCTTTGCCTTGAGAAGAGGCCTGGAGGTGGGAGCGAGGGTTGCCCAAGCCTGCTGTCCTCACCCTGCAGTGAGACGACCTTTGACTTTAAAGGGGTCAGGAGGATGAGCACGGCATTTTCTGAGTGCTCCTACCCCGAGACTGAGGAAGATGAGCACACATCAGATCGTGAAGCTCCTATAAGGTTCCAGAAGAGGCCTTCAAAGACAGAGTCCTCAGGGATTTTCCTCCGCACATTCTCGGCACGCAAGGAGACCTCAGCCGTGCTCAGCCGCATTCAAAAAATTGAACAAGCCTTGAAGGAAAGTCCTACTTCATCCCCACCACAGTATCTTAGCAATTGCTATGGCCTTGACAAGTCAAGACAGAAGTCTTTTACCATCAGTGGGACAGAGGACTTGGATAGCACTTGTGGCAGCAAGCGGAGTAGCATCTGCTCTGTGGCAACTGAACCTGATGTCTCTCCTGGGTCTGACAGATTGTTCAAGCTCAAGCAAAGATTCAGCATCAGCTCTACCAGGTCAGAGAGCCCAGAACTCCCTTCTGCACAGGACTCTCCTGGAATTACAGTGAACCCTTTGCCCAAACCCAAACGAACGTTTGAGTATGATGCGAACCGGAATCACAAAAGCTTGCTGCCTGGTAATGGACTACCTCCCTCAACTGAATCTCCACCTCCACTTCCTTCCACTCCAGCACCTGCTATAGTGACAAATTCCAAGACTGATGAAAGTAAGCTTAAGAAGACTCAAGACAG
Seq A exon
GTGAGAAACATGACTCTTTTTCACATTGTGTGATTGGCAGTCCTGGTAATAGTGGTTTGATTGGTAAATCAATCCAAAGAAAGAAGCATTCAATCATGTAGCAGGTAAACAAGTCAAGTGATTTGCTCAAGGTAACAATGTTAATAGATCATGGCTTGCTCTGTATTCAAATATGCTTAAGGGAGACATTTTACATTAATGTTAAGGATAATGAACTCAATCTATCTTAATTCAAACTAAAAACTAGACAGACCTATTTTTTGCTGAAAGAGAAAAAAGCTTGTCAGCTGCGGCAAAAATGACTGAGAAACAACGAATTTGTTTACGCCACTTAGTCGGTTTCCCCACGAACAAGAGATCATTTATTTTTCTTGGATAACAAAGTGTATAAAGCTTGTCTCAAGAATGTTGAATAGAACAAGGACCACAGGCCAAGCATTTGTTTTGTTGATATAGCTCTAGACTTTGAATTATTGGCTTTTGTTTCTGACTGCATAGTCTCTCACAGTGAATTGGCCTCTACAGTTTCACAGATTCTTATGTTACAAATCAAGTAAGCAAAATGAAATTTCCTGTCAGGCATTTGACGGCAAGCAGAGATCAACATGGAGATGCTAGTTTTGTTTTTTTCAGAGTTTCATAATTTTACCATATTAGGTGAATTTGTTGCTTTGTCAAATGTTAAACAATTACACAGCCTGGTTCTGTATATGACACAGTATCTTTTTATATCATATTGAGATTGGACCTGACACTGTTGAAACAGGCAATGTTTATTAATAATTTCTGACCTAAATTTAGATCAGAAGTCCAAAAATAGCATCAGCAGCAATAGTTTCAGCTGTACCATAAAACATATTTGAGTTTATTTTTAGACACTCAGCCGTGAGATGAAAGAATACAGAAAGTGAAATGTTTTGGAAGTTCAAAGACCTTAGAAACGTTGCTTCATCTTCTCTTTAAGTTGATATAAAACTGCTTCTTGGTCCTGTTTTTTTCTTCTGAGGGCCCTCATGTTGTTTATAGCTCATATTCCTCATGGCCTTTGGAATGATCTTTGGCATATGTATTGTTTAGACCAGTTACTGGTTATGGAGGGCTGCCAGTTTCTTGTGATGGAGAACCTCATGCGCTGGAGCATTTCTGCTGTTAAGCACTTGAACCCATGTTTGACATTCCTGTGGCTGGTACAGAGACAACCATTTAGAAAATATAGGCAAGCATTTGGATTGTGTCATGTTAAAGTGCCAATTTAGGGTTTCAACCTTCTTCTAAGATTTACAACCATGTTTTTTGGTTATATTTGTACATGCAAACACAACTAAACAAAAAGAAAGACATTACCTTCCTGTCAGAGGTGAGAACTACTTGTGTTGTTTGTATGCCTATTACAATAAAAAAATGTGTTATTACTGCCATACTAATATAACTTAATGCCACTGATCATGTATTGTTTATACAATGGCATAGTAAAGCAGACAGGCATAAAACATTTTTAAGGTCACTTAGAAGCTGTAATTAGATATTAAAAAGATAAATGTCCTGATATGAAGTATGACATTCATTTTAATGTAAAGAACCCCATGCATTCTGATGCCACATACTAGAATATGTGAATGAGAGTTAAGCGTCACAATTGCGACGACGCAGGTAGGTCATGTGATAATGACAAATAGAGGATGTAGTACATCCAAATTCCATTCATACTACTCAAGTTCATACTATATAAAATGTACTTTTCTAACGATCATCTAACTCCTTGAATAGTAGGCGATTTCGGACAACTAATAAAGTACCTAGTGCAAATTACTCTACACCAGGGGTGCCCAAACCTTTTCGTATGAAGGGCCAAAAACCAAATATAATAGATAGCCATGGGCTGAAGGTAAATATACCAAACTATATTACATTAAAGGTGGGTAATTTCCTAATTCATTTCAGAATATTTAAAAATAAATAGAAAATATCACATTAAATAATATTAACTAATGCTGTATAACTTTTTTCAATTGGCAACAAATTGCAATAAAAACATAAACAATAAACAAATTTCTCCGGGAGCTCCGGTTTCCCCTACAAGTCCAAAGACATGCGGTACAGGTAATTTGGGTAAGCCAAATTGTCCGAATTGTATGTATTTGTGCGAATGAGTGTGTTTGGGTTTCCCAGTGATAGGTTGCGGCTAGAAGGGCATCCGCTGCGTAAAACAAATGCTGGATAAGTTGGCGGGTCATTCCACTGTGGCGACTCCAGATTAATAATGAATCACATTTATAGCACTGTGGAGTTCAATGCTGAATACACTAGTCAAGCATAACCTGCCATTGACTTGATTTGCTCAACAAAGTCTCTGCATTGTCAGGTGACAGTATGTACATTTAAACAAAATTAGATAAATTTACACCATTTAATAGAAACATTTAATTTCAGTTAGCTTTTAACAATAAAACAAACAAACAAACAAATGGTTGCATTTAATTTGAATGGCCAATATCGATACCATCCCCATCATACTCATCACTCTTCTCAGAAGGGATGGGATGGAACTTTTGCCCACGGGCCCTAGTTTGGGCATCTCTACTGTACACAGTGGAAACACACCAGCAAGTGAGCTGTACTAAGCTGTACCTTGCAGTGGAAAAGCATCATTACATTATGGTAGGACTGTTAGGTGACTGGATGTATTAAAGACCTTCATAAGTGATTCATCTTTCATCTTCTCTGGCCGTCTGGCCTGATTGTGATCATTCAATTAAAAGGTTTTGCCTTGAGCAAAACAGAACTGCTCGTCACTTATTCAGAAGGGTGATGTCCAAAAGCTGTGTTTTGACTTTATCTCTGTTTGTTTGTAG
Seq C2 exon
AGAGTCATGTGAGTCAGAAGATGCTGTCAGTCTGCCTTCCTCACCCACAGAAAATGGCACAGTAAACCACAGTCGGCCCAGCTCCAAGAGCACGCTAGAGGAAAACGCCTATGAGGACATAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]